Browse Element(s) Details


OsAffx.29252.1.S1_at

Description tigr:9636.m01767
TID=OsAffx.29252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1756011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17500Os.54671.1.S1_at11/118+10712239..10714449NmrA-like family protein, expressed
LOC_Os08g17510OsAffx.5856.1.S1_at10/118+10716970..10718323Sulfotransferase domain containing protein, expressed
LOC_Os08g17520OsAffx.17047.1.S1_at11/118+10719419..10720402Flavonol sulfotransferase, putative, expressed
LOC_Os08g17530NANA8+10723539..10724003hypothetical protein
LOC_Os08g17540NANA8+10725180..10725822hypothetical protein
LOC_Os08g17544OsAffx.31844.1.S1_at1/118+10729375..10730390NA
LOC_Os08g17544OsAffx.17914.1.S1_x_at1/118+10729375..10730390NA
LOC_Os08g17550OsAffx.12322.1.S1_at1/118+10732950..10735261retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17560OsAffx.29252.1.S1_at11/118+10736795..10738309hypothetical protein
LOC_Os08g17570NANA8+10738728..10742979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17580OsAffx.29253.1.S1_at10/118+10747371..10748471hypothetical protein
LOC_Os08g17589NANA8+10752403..10752955NA
LOC_Os08g17600Os.5966.1.S1_at11/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17600Os.12213.1.S1_at1/118+10753251..10757279Syntaxin 51, putative, expressed
LOC_Os08g17610Os.49498.1.S1_at11/118+10761467..10764844expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29252.1.S1_at--794--451Chr08:10737330..10737354 (25 bp)
ATCTCTTAATGCATGGACCTACCTT
LOC_Os08g17560
OsAffx.29252.1.S1_at--825--3371Chr08:10737286..10737310 (25 bp)
CAGCCTAATGCTTTGGTTCCATATC
LOC_Os08g17560
OsAffx.29252.1.S1_at--396--7911Chr08:10737272..10737296 (25 bp)
GGTTCCATATCAGATGCCCATTCAT
LOC_Os08g17560
OsAffx.29252.1.S1_at--529--10551Chr08:10737252..10737276 (25 bp)
TTCATCATGTTCTTCACTTTTCTCT
LOC_Os08g17560
OsAffx.29252.1.S1_at--789--3771Chr08:10737221..10737245 (25 bp)
CTCTGCGCTCATCTGGGCTAAAGAA
LOC_Os08g17560
OsAffx.29252.1.S1_at--45--5051Chr08:10737182..10737206 (25 bp)
GCAGACTTTGTTAATTCAGCCCATC
LOC_Os08g17560
OsAffx.29252.1.S1_at--980--3851Chr08:10737144..10737168 (25 bp)
CTGAGCCCTCTCAAGATTCTTTGGA
LOC_Os08g17560
OsAffx.29252.1.S1_at--210--8551Chr08:10737111..10737135 (25 bp)
TGGATCCTTTCCTGCAGAGTCAAGA
LOC_Os08g17560
OsAffx.29252.1.S1_at--777--9871Chr08:10736977..10737001 (25 bp)
TACATGTCCCCTGATCCTAAATTGG
LOC_Os08g17560
OsAffx.29252.1.S1_at--27--171Chr08:10736873..10736897 (25 bp)
ATTTTCACTTAATCCTTTGCCTTTG
LOC_Os08g17560
OsAffx.29252.1.S1_at--763--4451Chr08:10736855..10736879 (25 bp)
GCCTTTGGATTTTTGTGAGCCTCAT
LOC_Os08g17560
Target Sequence 
ATCTCTTAATGCATGGACCTACCTTTTCTGGGCTTGCTGTGGCCCAGCCTAATGCTTTGGTTCCATATCAGATGCCCATT
CATCATGTTCTTCACTTTTCTCTTCTGGCCTCTGCGCTCATCTGGGCTAAAGAAAATTGGAATACTCAGCAGACTTTGTT
AATTCAGCCCATCAATATGGTGCCTCCTGAGCCCTCTCAAGATTCTTTGGATCTCCCAGTGGATCCTTTCCTGCAGAGTC
AAGATGTGTCCCCATCTTTGCCCCCTAAACCAAAGAGGAAGAAATCTGGTAAAGTTGTTCTGGTGGATTCAGATAGGAGG
AGAAGTGCTAGAATAAACAAGATCAATGATGGCTACATGTCCCCTGATCCTAAATTGGGTGTTGGAAAACCTAGAGGGAA
AACCAAGGCAAAGAGTACTAAAAGGCTTAAGGCTTTGGCTGAAGAAAGTGGTATTTTATTTTCACTTAATCCTTTGCCTT
TGGATTTTTGTGAGCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis