Browse Element(s) Details


OsAffx.17047.1.S1_at

Description tigr:9636.m01763
TID=OsAffx.17047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1752011/11Flavonol sulfotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17480OsAffx.18275.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified
LOC_Os08g17480OsAffx.22699.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified
LOC_Os08g17490NANA8+10703824..10706786hypothetical protein
LOC_Os08g17500Os.54671.1.S1_at11/118+10712239..10714449NmrA-like family protein, expressed
LOC_Os08g17510OsAffx.5856.1.S1_at10/118+10716970..10718323Sulfotransferase domain containing protein, expressed
LOC_Os08g17520OsAffx.17047.1.S1_at11/118+10719419..10720402Flavonol sulfotransferase, putative, expressed
LOC_Os08g17530NANA8+10723539..10724003hypothetical protein
LOC_Os08g17540NANA8+10725180..10725822hypothetical protein
LOC_Os08g17544OsAffx.31844.1.S1_at1/118+10729375..10730390NA
LOC_Os08g17544OsAffx.17914.1.S1_x_at1/118+10729375..10730390NA
LOC_Os08g17550OsAffx.12322.1.S1_at1/118+10732950..10735261retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17560OsAffx.29252.1.S1_at11/118+10736795..10738309hypothetical protein
LOC_Os08g17570NANA8+10738728..10742979retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17047.1.S1_at--184--7391Chr08:10720344..10720368 (25 bp)
GTGATGGGCAAGCTGCAGGGCCCGT
LOC_Os08g17520
OsAffx.17047.1.S1_at--1003--7671Chr08:10720192..10720216 (25 bp)
GGGTTCTGGCTGCTGGAGGACTGGG
LOC_Os08g17520
OsAffx.17047.1.S1_at--974--7191Chr08:10720105..10720129 (25 bp)
GTCGTGCTCGCGACGCTGCCCAAGG
LOC_Os08g17520
OsAffx.17047.1.S1_at--807--4371Chr08:10720086..10720110 (25 bp)
CCAAGGCCGGGACCACGTGGCTCAA
LOC_Os08g17520
OsAffx.17047.1.S1_at--1074--4091Chr08:10719980..10720004 (25 bp)
CGACTGCGTGCCTACCGTGGAGAGT
LOC_Os08g17520
OsAffx.17047.1.S1_at--912--3711Chr08:10719969..10719993 (25 bp)
CTACCGTGGAGAGTGGCCTGTTCGC
LOC_Os08g17520
OsAffx.17047.1.S1_at--926--1331Chr08:10719960..10719984 (25 bp)
AGAGTGGCCTGTTCGCGTGTGGGCG
LOC_Os08g17520
OsAffx.17047.1.S1_at--220--6211Chr08:10719905..10719929 (25 bp)
GAGGCTCTTGAACACGCACCTGCCA
LOC_Os08g17520
OsAffx.17047.1.S1_at--688--9551Chr08:10719865..10719889 (25 bp)
TCTTCAATAACCGACAATGATGATT
LOC_Os08g17520
OsAffx.17047.1.S1_at--933--2991Chr08:10719828..10719874 (25 bp)
AATGATGATTGTACCTTCTTTTTCC
LOC_Os08g17520
OsAffx.17047.1.S1_at--106--8811Chr08:10719823..10719869 (25 bp)
TGATTGTACCTTCTTTTTCCTACTC
LOC_Os08g17520
Target Sequence 
GTGATGGGCAAGCTGCAGGGCCCGTCCCGTTCAAGGAGGTCGCCGGCGTCGACGCCATCCCGGCTCGCCCCGTCACTGAG
CACGACGCCGCCATCTCCGGCATGCCGAGGCGCCTCGTCTACAACAACAGCCTCCCGATCCTCTCCTACAGGGGGTTCTG
GCTGCTGGAGGACTGGGCGCGGGGCACGGCCGCCATGGCCGACGAGCGCCGCGGCGGCTTCGTGGCGCGCCCCGGCGACG
TCGTGCTCGCGACGCTGCCCAAGGCCGGGACCACGTGGCTCAAGGCCCTCGCGTTCGCCACCATGGCGCGCGGCTTGTTC
CCGCCGGCGAGCCCCGACCACCCGCTCCGCCGCCTCAACTCGCACGACTGCGTGCCTACCGTGGAGAGTGGCCTGTTCGC
GTGTGGGCGGGAGGGTGTGCTGGACAAGCTGCCGTCGCCGAGGCTCTTGAACACGCACCTGCCACTCTCGCTGCTGCCTT
CTTCAATAACCGACAATGATGATTGTACCTTCTTTTTCCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis