Browse Element(s) Details


OsAffx.5856.1.S1_at

Description tigr:9636.m01762
TID=OsAffx.5856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1751010/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17470NANA8+10692171..10694331retrotransposon protein, putative, unclassified
LOC_Os08g17480OsAffx.18275.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified
LOC_Os08g17480OsAffx.22699.1.S1_x_at1/118+10696536..10703008retrotransposon protein, putative, unclassified
LOC_Os08g17490NANA8+10703824..10706786hypothetical protein
LOC_Os08g17500Os.54671.1.S1_at11/118+10712239..10714449NmrA-like family protein, expressed
LOC_Os08g17510OsAffx.5856.1.S1_at10/118+10716970..10718323Sulfotransferase domain containing protein, expressed
LOC_Os08g17520OsAffx.17047.1.S1_at11/118+10719419..10720402Flavonol sulfotransferase, putative, expressed
LOC_Os08g17530NANA8+10723539..10724003hypothetical protein
LOC_Os08g17540NANA8+10725180..10725822hypothetical protein
LOC_Os08g17544OsAffx.31844.1.S1_at1/118+10729375..10730390NA
LOC_Os08g17544OsAffx.17914.1.S1_x_at1/118+10729375..10730390NA
LOC_Os08g17550OsAffx.12322.1.S1_at1/118+10732950..10735261retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17560OsAffx.29252.1.S1_at11/118+10736795..10738309hypothetical protein
LOC_Os08g17570NANA8+10738728..10742979retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5856.1.S1_at--897--5771NONE
GACGACCGGGTCCTCATAGATGAGA
NONE
OsAffx.5856.1.S1_at--745--951Chr08:10717442..10717466 (25 bp)
AGGACAGAGCAGTCTCCACATGGCA
LOC_Os08g17510
OsAffx.5856.1.S1_at--1148--2111Chr08:10717425..10717449 (25 bp)
ACATGGCACTTCATCAAGCGTATCA
LOC_Os08g17510
OsAffx.5856.1.S1_at--991--771Chr08:10717385..10717409 (25 bp)
ATGTGCCATTCTCCGAGGTGTACAA
LOC_Os08g17510
OsAffx.5856.1.S1_at--965--7031Chr08:10717366..10717390 (25 bp)
GTACAAGTCTATCTGCGAGGGCACT
LOC_Os08g17510
OsAffx.5856.1.S1_at--964--131Chr08:10717216..10717240 (25 bp)
ATTAGCAGAGTTCCTTGGGCAGCCG
LOC_Os08g17510
OsAffx.5856.1.S1_at--528--8651Chr08:10717201..10717225 (25 bp)
TGGGCAGCCGATTTCTGATGCCGAA
LOC_Os08g17510
OsAffx.5856.1.S1_at--1019--6031Chr08:10717155..10717179 (25 bp)
GAGATCGTAGAGCTTTGCAGCCTAG
LOC_Os08g17510
OsAffx.5856.1.S1_at--498--1031Chr08:10717091..10717115 (25 bp)
AGGGTGTCGGCATTACGTTCTCGAA
LOC_Os08g17510
OsAffx.5856.1.S1_at--168--10871Chr08:10717033..10717057 (25 bp)
TTGGCTGAACCATATGACCCTCGAG
LOC_Os08g17510
OsAffx.5856.1.S1_at--1046--1271Chr08:10717010..10717034 (25 bp)
AGATGGGACAACACCTGGACTCAAT
LOC_Os08g17510
Target Sequence 
GACGACCGGGTCCTCATAGATGAGAAGGACAGAGCAGTCTCCACATGGCACTTCATCAAGCGTATCAAACGTATTGGATC
AGATGTGCCATTCTCCGAGGTGTACAAGTCTATCTGCGAGGGCACTTCTGCCTGTGGGCCTGTCTGGGATCACATCCTCG
GCTACTGGAACGCAAGCAAAAAAGAGCCAAGTAGGGTACTCTTCCTAACATATGAACAGATGCTCCAAGATCCGATGGGC
ACAATTAGGCAATTAGCAGAGTTCCTTGGGCAGCCGATTTCTGATGCCGAAGAAGAAACGGGTGTTGTTGCAGAGATCGT
AGAGCTTTGCAGCCTAGAGAGCATGAAGAAACAAAAGATCAACAGGGAAGGATACCAGGGTGTCGGCATTACGTTCTCGA
ACGATGCCTACTTCAGAAAGGGAGTGGCAGGAGATTGGCTGAACCATATGACCCTCGAGATGGGACAACACCTGGACTCA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis