Browse Element(s) Details


Os.44779.1.S1_at

Description gb:AK111591.1
DB_XREF= gi:37988254
TID=Os.44779.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034A04.30 (P0034A04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089I15, full insert sequence.
FL= gb:AK111591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4930011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44779.1.S1_at--709--7711Chr07:29528779..29528803 (25 bp)
GGTGGAAGCTATAATTAACGTTGTT
LOC_Os07g49300
Os.44779.1.S1_at--599--6631Chr07:29528801..29528825 (25 bp)
GTTGTGTTTGTATATGCTGCGTCCT
LOC_Os07g49300
Os.44779.1.S1_at--921--6851Chr07:29528806..29528830 (25 bp)
GTTTGTATATGCTGCGTCCTACACA
LOC_Os07g49300
Os.44779.1.S1_at--1075--251Chr07:29528812..29528836 (25 bp)
ATATGCTGCGTCCTACACAAATCAA
LOC_Os07g49300
Os.44779.1.S1_at--573--9111Chr07:29528815..29528839 (25 bp)
TGCTGCGTCCTACACAAATCAAGTA
LOC_Os07g49300
Os.44779.1.S1_at--1106--3071Chr07:29528831..29528855 (25 bp)
AATCAAGTAGGTCCAATCCAGGCAT
LOC_Os07g49300
Os.44779.1.S1_at--539--6931Chr07:29528837..29528861 (25 bp)
GTAGGTCCAATCCAGGCATGACATT
LOC_Os07g49300
Os.44779.1.S1_at--70--7271Chr07:29528841..29528865 (25 bp)
GTCCAATCCAGGCATGACATTTACA
LOC_Os07g49300
Os.44779.1.S1_at--1075--5671Chr07:29528856..29528880 (25 bp)
GACATTTACATGTACTGATTGCTGA
LOC_Os07g49300
Os.44779.1.S1_at--1134--10471Chr07:29528861..29528885 (25 bp)
TTACATGTACTGATTGCTGATTGCC
LOC_Os07g49300
Os.44779.1.S1_at--224--4751Chr07:29528876..29528900 (25 bp)
GCTGATTGCCATTGATTCATATTCA
LOC_Os07g49300
Target Sequence 
GGTGGAAGCTATAATTAACGTTGTTGTGTTTGTATATGCTGCGTCCTACACAAATCAAGTAGGTCCAATCCAGGCATGAC
ATTTACATGTACTGATTGCTGATTGCCATTGATTCATATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis