Browse Element(s) Details


Os.44779.2.S1_x_at

Description gb:NM_185576.1
DB_XREF= gi:34898237
GEN=P0034A04.30
TID=Os.44779.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034A04.30 (P0034A04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0034A04.30 (P0034A04.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4930011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44779.2.S1_x_at--877--4871Chr07:29527738..29527762 (25 bp)
GCTATTAATGCCTCAATGGACCAGA
LOC_Os07g49300
Os.44779.2.S1_x_at--698--8011Chr07:29527860..29527884 (25 bp)
GGAGGAATTCTTGGTGGCATCATTA
LOC_Os07g49300
Os.44779.2.S1_x_at--1015--10491Chr07:29527929..29527953 (25 bp)
TTAAGTGCACAAACCATGAGCGAAC
LOC_Os07g49300
Os.44779.2.S1_x_at--462--8811Chr07:29527985..29528009 (25 bp)
TGTTGAACCATCAATACCCGATCCT
LOC_Os07g49300
Os.44779.2.S1_x_at--607--4051Chr07:29528003..29528027 (25 bp)
CGATCCTGACGACCCCATAGAAGAA
LOC_Os07g49300
Os.44779.2.S1_x_at--813--6291Chr07:29528128..29528152 (25 bp)
GATGATGAAATTCCACTAGCACCCC
LOC_Os07g49300
Os.44779.2.S1_x_at--1146--4331Chr07:29528155..29528179 (25 bp)
CCAGCATCATCTACATCTCATGTGA
LOC_Os07g49300
Os.44779.2.S1_x_at--914--3931Chr07:29528462..29528486 (25 bp)
CGGCGGCTGCTCATGCAAAAGATAA
LOC_Os07g49300
Os.44779.2.S1_x_at--1145--5211Chr07:29528686..29528710 (25 bp)
GAATAAGCCAACGAACCGCGGAGCT
LOC_Os07g49300
Os.44779.2.S1_x_at--893--1511Chr07:29528720..29528744 (25 bp)
AGCAGAGAATTTTGCTTCCCTGGCC
LOC_Os07g49300
Os.44779.2.S1_x_at--13--4271Chr07:29528738..29528762 (25 bp)
CCTGGCCCAGGAGCTTGCGAAATCA
LOC_Os07g49300
Target Sequence 
GCTATTAATGCCTCAATGGACCAGAAAAGAAACCAGACTCCAGCAGGAGGAATTCTTGGTGGCATCATTAAAGGATTGAA
AGGCAAAGAAGAAAATGCAAAACAGAAAGGAAGTTTAAGTGCACAAACCATGAGCGAACAGTTGGAATCGATTTTCTTGA
AAGAATCACTTGTTGAACCATCAATACCCGATCCTGACGACCCCATAGAAGAACTGTCAATAGACGACATAGATATCGAT
GATGAAATTCCACTAGCACCCCCACCAGCATCATCTACATCTCATGTGAATAAAAAAACAACAGCTGAGGAGGAGAGAGC
AAAGCTATTTGAAGGATCAAGCAATGTTGAAATGCCAAGAATGAGAACTCACCAAGAAATTCTCACCAAATATAAGTTTG
GCGGGGATGCGGCGGCGGCGGCTGCTCATGCAAAAGATAAGCTCATGCAGCGACAGGAGAAACTAGAGAGAATAAGCCAA
CGAACCGCGGAGCTTGAGAGTGGAGCAGAGAATTTTGCTTCCCTGGCCCAGGAGCTTGCGAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44779.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis