Browse Element(s) Details


Os.44850.1.S1_at

Description gb:NM_185367.1
DB_XREF= gi:34897819
GEN=P0514G12.30
TID=Os.44850.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514G12.30 (P0514G12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0514G12.30 (P0514G12.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0199011/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01950OsAffx.22608.1.S1_at11/116+529833..531434phosphoglycerate mutase family protein, expressed
LOC_Os06g01960OsAffx.22608.3.S1_x_at11/116+532475..534605hypothetical protein
LOC_Os06g01960OsAffx.22608.3.S1_at11/116+532475..534605hypothetical protein
LOC_Os06g01960Os.4403.1.A1_x_at4/116+532475..534605hypothetical protein
LOC_Os06g01966Os.4404.1.S1_at11/116+542058..544778Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01966Os.4404.1.S1_s_at11/116+542058..544778Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01972Os.11580.1.S1_at10/116+545505..549383Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01980Os.4407.1.S1_at11/116+549954..554812Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01980Os.4407.2.S1_at10/116+549954..554812Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01990Os.44850.1.S1_at11/116+554637..555548HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os06g02000Os.52419.1.S1_at11/116+563535..566659Uridylate kinase, putative, expressed
LOC_Os06g02010NANA6+572964..573323hypothetical protein
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44850.1.S1_at--1096--8031Chr06:555201..555225 (25 bp)
GGAGTTCGGCATGGCCCACATGGCC
LOC_Os06g01990
Os.44850.1.S1_at--868--3951Chr06:555173..555197 (25 bp)
CGGAGCAACCACCAGATCGGCAGCT
LOC_Os06g01990
Os.44850.1.S1_at--87--9511Chr06:554941..554965 (25 bp)
TCTCCGACTTCTTCCAGGTCATCGT
LOC_Os06g01990
Os.44850.1.S1_at--186--3791Chr06:554825..554849 (25 bp)
CTCGTCTTCGAGGACTCGGTGGTCG
LOC_Os06g01990
Os.44850.1.S1_at--876--7971Chr06:554776..554800 (25 bp)
GGATGCCGGTGATCGCCGTTGCGGA
LOC_Os06g01990
Os.44850.1.S1_at--159--5891Chr06:554719..554743 (25 bp)
GAGCGTCCCTCGTCATCAGGGACTA
LOC_Os06g01990
Os.44850.1.S1_at--413--9631Chr06:554704..554728 (25 bp)
TCAGGGACTACAAAGACCACAAGCT
LOC_Os06g01990
Os.44850.1.S1_at--837--2331Chr06:554693..554717 (25 bp)
AAAGACCACAAGCTCTGGGCGGCAT
LOC_Os06g01990
Os.44850.1.S1_at--585--1691Chr06:554689..554713 (25 bp)
ACCACAAGCTCTGGGCGGCATTAGA
LOC_Os06g01990
Os.44850.1.S1_at--1118--3771Chr06:554681..554705 (25 bp)
CTCTGGGCGGCATTAGACAAGCTCC
LOC_Os06g01990
Os.44850.1.S1_at--636--4691Chr06:554675..554699 (25 bp)
GCGGCATTAGACAAGCTCCAAGCAG
LOC_Os06g01990
Target Sequence 
GGAGTTCGGCATGGCCCACATGGCCGGCCGGAGCAACCACCAGATCGGCAGCTTCCTCTTCCCGGACTGGCCCCAGCACC
GCCTCGACGCCTTCTTCGCCGACAAGGAGGCCCTCTTCGCGCGCTACGCCGCCGAGGGCCTCCGCGAGGTCGCCGGCCTC
ACCGACCTCTGCCGGTGGGCCGCCGCCCGCGGCCTCAAGCGCGCCGCCGTCACCAACGCGCCGCGGGCCAACGCCGACCT
CATGATCTCCATCCTCGGCCTCTCCGACTTCTTCCAGGTCATCGTCGCCGCTGCCGACGACTGCGACCTCCCCAAGCCCT
CGCCGGAGCCCTACCTCCGGGCGCTCAGCCTGCTCGGCGCGTCTCCCCGTCACACGCTCGTCTTCGAGGACTCGGTGGTC
GGGGTGCAGGCCGGCGTCGCCGCCGGGATGCCGGTGATCGCCGTTGCGGAGGAGGCCCGGGAGGCCAAGGTCGTCGCCGC
CGGAGCGTCCCTCGTCATCAGGGACTACAAAGACCACAAGCTCTGGGCGGCATTAGACAAGCTCCAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis