Browse Element(s) Details

Os.4404.1.S1_s_at

Description

gb:AK060278.1
DB_XREF= gi:32970296
TID=Os.4404.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-A04, full insert sequence.
FL= gb:AK099078.1 gb:AK060278.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01966	11/11	Integral membrane protein DUF6 containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01934	Os.9332.2.S1_x_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.1.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.53217.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.43567.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.38172.1.S1_x_at	3/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01950	OsAffx.22608.1.S1_at	11/11	6	+	529833..531434	phosphoglycerate mutase family protein, expressed
LOC_Os06g01960	OsAffx.22608.3.S1_x_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	OsAffx.22608.3.S1_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	Os.4403.1.A1_x_at	4/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01966	Os.4404.1.S1_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01966	Os.4404.1.S1_s_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01972	Os.11580.1.S1_at	10/11	6	+	545505..549383	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01980	Os.4407.1.S1_at	11/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01980	Os.4407.2.S1_at	10/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01990	Os.44850.1.S1_at	11/11	6	+	554637..555548	HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os06g02000	Os.52419.1.S1_at	11/11	6	+	563535..566659	Uridylate kinase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4404.1.S1_s_at--721--757	1	Chr06:543859..543883 (25 bp)	GGGCTACGTACTGATGACATGGTGT	LOC_Os06g01966
Os.4404.1.S1_s_at--108--603	1	Chr06:543892..543916 (25 bp)	GAGAGGTCCAGTGTTCACTTCAGCC	LOC_Os06g01966
Os.4404.1.S1_s_at--528--367	1	Chr06:543916..543940 (25 bp)	CTTTATTCCCATCATCCAGATCATG	LOC_Os06g01966
Os.4404.1.S1_s_at--468--791	1	Chr06:543940..543964 (25 bp)	GGTTGCCATAATTGATTTCTTCTAT	LOC_Os06g01966
Os.4404.1.S1_s_at--869--67	1	Chr06:543969..543990 (22 bp)	ATGAGAACCTCTACCTTGGAAGTGT	LOC_Os06g01966
Os.4404.1.S1_s_at--1060--657	1	Chr06:544334..544358 (25 bp)	GATTCTGGGCCTATATATTCTTCTG	LOC_Os06g01966
Os.4404.1.S1_s_at--703--249	1	Chr06:544368..544392 (25 bp)	AACAGGGATACATCTGCAGCAGCAT	LOC_Os06g01966
Os.4404.1.S1_s_at--1041--815	1	Chr06:544552..544576 (25 bp)	GGAAACATGATGTATTCTCCCAATC	LOC_Os06g01966
Os.4404.1.S1_s_at--718--931	1	Chr06:544569..544593 (25 bp)	TCCCAATCACCGCAGTTATGTTTAA	LOC_Os06g01966
Os.4404.1.S1_s_at--1012--851	1	Chr06:544597..544621 (25 bp)	TGGAACACTGTAAATCACCCTGCTC	LOC_Os06g01966
Os.4404.1.S1_s_at--1004--1051	1	Chr06:544636..544660 (25 bp)	TTCACTTGATGCTTAACCCTGACTT	LOC_Os06g01966

Target Sequence

GGGCTACGTACTGATGACATGGTGTGTCGAAAAGAGAGGTCCAGTGTTCACTTCAGCCTTTATTCCCATCATCCAGATCA
TGGTTGCCATAATTGATTTCTTCTATCTACATGAGAACCTCTACCTTGGAAGTGTTGTTGGATCCATATTGATGATTCTG
GGCCTATATATTCTTCTGTGGGGAAAGAACAGGGATACATCTGCAGCAGCATCTGCCAAAGAAGCCAAAGAAGAGGAAGA
GGACAAGGAGAAGCAAGTCAAACCATTAGGACCAAACTAAGTTGGTATTGTACTAGTTTGGGATTGTAGAACATGAAAAA
TAGTTCATCCTCCTACTACCAGTAGTGTTGGTATTGTAGTTTCTTTTACTGGGAAACATGATGTATTCTCCCAATCACCG
CAGTTATGTTTAATTATGGAACACTGTAAATCACCCTGCTCCCTGCAGCTCAAAATTCACTTGATGCTTAACCCTGACTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis