Browse Element(s) Details

OsAffx.22608.1.S1_at

Description

gb:NM_185362.1
DB_XREF= gi:34897809
GEN=P0514G12.25
TID=OsAffx.22608.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0514G12.25 (P0514G12.25), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01950	11/11	phosphoglycerate mutase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01899	NA	NA	6	+	504442..505200	hypothetical protein
LOC_Os06g01910	OsAffx.22610.1.S1_at	11/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01910	Os.50533.1.S1_at	1/11	6	+	509121..510150	agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01920	OsAffx.22609.1.S1_x_at	11/11	6	+	510856..511805	Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01920	OsAffx.18574.1.S1_x_at	1/11	6	+	510856..511805	Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_x_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.2.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.9332.1.S1_at	11/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.53217.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.43567.1.S1_x_at	4/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934	Os.38172.1.S1_x_at	3/11	6	+	522061..529058	bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01950	OsAffx.22608.1.S1_at	11/11	6	+	529833..531434	phosphoglycerate mutase family protein, expressed
LOC_Os06g01960	OsAffx.22608.3.S1_x_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	OsAffx.22608.3.S1_at	11/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01960	Os.4403.1.A1_x_at	4/11	6	+	532475..534605	hypothetical protein
LOC_Os06g01966	Os.4404.1.S1_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01966	Os.4404.1.S1_s_at	11/11	6	+	542058..544778	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01972	Os.11580.1.S1_at	10/11	6	+	545505..549383	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01980	Os.4407.1.S1_at	11/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01980	Os.4407.2.S1_at	10/11	6	+	549954..554812	Cell division control protein 48 homolog C, putative, expressed
LOC_Os06g01990	Os.44850.1.S1_at	11/11	6	+	554637..555548	HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0003824	molecular_function	catalytic activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.22608.1.S1_at--590--943	1	Chr06:530374..530398 (25 bp)	TCGGCAACTTCCAGGACAGGGACAA	LOC_Os06g01950
OsAffx.22608.1.S1_at--229--457	1	Chr06:530233..530257 (25 bp)	GCGCCGACATCGACATCGGGAGGTT	LOC_Os06g01950
OsAffx.22608.1.S1_at--353--53	1	Chr06:530225..530249 (25 bp)	ATCGACATCGGGAGGTTCCAGCCGC	LOC_Os06g01950
OsAffx.22608.1.S1_at--675--587	1	Chr06:530195..530219 (25 bp)	GAGCGCAACCCGGACATGAACGTCG	LOC_Os06g01950
OsAffx.22608.1.S1_at--567--395	1	Chr06:530185..530209 (25 bp)	CGGACATGAACGTCGTGCTCGTCTC	LOC_Os06g01950
OsAffx.22608.1.S1_at--520--465	1	Chr06:530143..530167 (25 bp)	GCGTCTTCCTCATGCGCTGGTACAA	LOC_Os06g01950
OsAffx.22608.1.S1_at--823--961	1	Chr06:530134..530158 (25 bp)	TCATGCGCTGGTACAAGTGGACGGT	LOC_Os06g01950
OsAffx.22608.1.S1_at--280--985	1	Chr06:530123..530147 (25 bp)	TACAAGTGGACGGTGTCGCAGTTCG	LOC_Os06g01950
OsAffx.22608.1.S1_at--569--159	1	Chr06:530005..530029 (25 bp)	AGCTCCGGGAGTTCGGCCTCACCGA	LOC_Os06g01950
OsAffx.22608.1.S1_at--528--185	1	Chr06:529870..529894 (25 bp)	ACGACAAACACAAAGCCGCCATTGA	LOC_Os06g01950
OsAffx.22608.1.S1_at--746--219	1	Chr06:529863..529887 (25 bp)	ACACAAAGCCGCCATTGACGACGGC	LOC_Os06g01950

Target Sequence

TCGGCAACTTCCAGGACAGGGACAAGATGCGGGTGGAGAAGGAGATCCGGCGGCGGTACGGCCGCTTCTTCTACCGCTTC
CCCAACGGCGAGTCGGCGGCGGACGTGTACGACCGCATCACCGGCTTCCGCGAGACGCTGCGCGCCGACATCGACATCGG
GAGGTTCCAGCCGCCCGGGGAGCGCAACCCGGACATGAACGTCGTGCTCGTCTCCCATGGCCTCACCCTCCGCGTCTTCC
TCATGCGCTGGTACAAGTGGACGGTGTCGCAGTTCGAGGGCCTCGCCAACCTCTCCAATGGCGGCGCGCTCGTCATGCAG
ACCGGCGCCGGCGGGAGGTACAGCCTGCTGGTGCACCACTCCGTGGACGAGCTCCGGGAGTTCGGCCTCACCGACGACAT
GATCGAGGACCAGAAGTGGCAGATGACGGCGAGGCCCGGCGAGCTCAACTACAACTTCATCACCAACGGCCCTTCCTTCT
TCACCCACTTCACCCATCATCACCACGACAAACACAAAGCCGCCATTGACGACGGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis