Browse Element(s) Details


OsAffx.22610.1.S1_at

Description tigr:9634.m00090
TID=OsAffx.22610.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0191011/11agamous-like MADS box protein OPMADS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01860Os.36672.1.S1_at11/116+483347..484309expressed protein
LOC_Os06g01860Os.36672.2.S1_x_at11/116+483347..484309expressed protein
LOC_Os06g01870NANA6+488917..489695hypothetical protein
LOC_Os06g01879NANA6+497435..498193hypothetical protein
LOC_Os06g01890NANA6+501599..503591retrotransposon protein, putative, unclassified
LOC_Os06g01899NANA6+504442..505200hypothetical protein
LOC_Os06g01910OsAffx.22610.1.S1_at11/116+509121..510150agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01910Os.50533.1.S1_at1/116+509121..510150agamous-like MADS box protein OPMADS1, putative, expressed
LOC_Os06g01920OsAffx.22609.1.S1_x_at11/116+510856..511805Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01920OsAffx.18574.1.S1_x_at1/116+510856..511805Alpha-expansin 7 precursor, putative, expressed
LOC_Os06g01934Os.9332.2.S1_x_at11/116+522061..529058bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934Os.9332.2.S1_at11/116+522061..529058bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934Os.9332.1.S1_at11/116+522061..529058bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934Os.53217.1.S1_x_at4/116+522061..529058bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934Os.43567.1.S1_x_at4/116+522061..529058bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01934Os.38172.1.S1_x_at3/116+522061..529058bell-like homeodomain protein 3, putative, expressed
LOC_Os06g01950OsAffx.22608.1.S1_at11/116+529833..531434phosphoglycerate mutase family protein, expressed
LOC_Os06g01960OsAffx.22608.3.S1_x_at11/116+532475..534605hypothetical protein
LOC_Os06g01960OsAffx.22608.3.S1_at11/116+532475..534605hypothetical protein
LOC_Os06g01960Os.4403.1.A1_x_at4/116+532475..534605hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22610.1.S1_at--641--11Chr06:509292..509316 (25 bp)
AGGGCGAAAACCTGGAATCATGCTC
LOC_Os06g01910
OsAffx.22610.1.S1_at--271--5251Chr06:509306..509330 (25 bp)
GAATCATGCTCGTTGCAAGAACTGC
LOC_Os06g01910
OsAffx.22610.1.S1_at--229--5171Chr06:509320..509344 (25 bp)
GCAAGAACTGCATGGCCTGGAGATG
LOC_Os06g01910
OsAffx.22610.1.S1_at--483--5351Chr06:509353..509377 (25 bp)
GAAGAGCCTAAGCAGCATCCGTTTA
LOC_Os06g01910
OsAffx.22610.1.S1_at--754--5031Chr06:509364..509388 (25 bp)
GCAGCATCCGTTTACAAAAGGCAAG
LOC_Os06g01910
OsAffx.22610.1.S1_at--101--7811Chr06:509394..509418 (25 bp)
GGTCGCAATGTGCTATCTATGTTGT
LOC_Os06g01910
OsAffx.22610.1.S1_at--519--1251Chr06:509795..509819 (25 bp)
AGATTCTGTCGGAGGAGAACGCACT
LOC_Os06g01910
OsAffx.22610.1.S1_at--943--8051Chr06:509808..509832 (25 bp)
GGAGAACGCACTGCTCCTCGATCAG
LOC_Os06g01910
OsAffx.22610.1.S1_at--466--7611Chr06:510042..510066 (25 bp)
GGGCAAGGTGCAACATGCTCCAATC
LOC_Os06g01910
OsAffx.22610.1.S1_at--389--4791Chr06:510070..510094 (25 bp)
GCTCCAGCGCGCGAGATGAATCAGA
LOC_Os06g01910
OsAffx.22610.1.S1_at--93--5251Chr06:510087..510111 (25 bp)
GAATCAGAACCAGCATGTCCAGGAT
LOC_Os06g01910
Target Sequence 
AGGGCGAAAACCTGGAATCATGCTCGTTGCAAGAACTGCATGGCCTGGAGATGCAGATGGAGAAGAGCCTAAGCAGCATC
CGTTTACAAAAGGCAAGCAAATGGTCGCAATGTGCTATCTATGTTGTTGCTGTTCAAAAGAAGCTGATGGATAAGATTTC
ACAGCTACAACAACAGGAGAAGATTCTGTCGGAGGAGAACGCACTGCTCCTCGATCAGGGCAAGGTGCAACATGCTCCAA
TCGGGGCTCCAGCGCGCGAGATGAATCAGAACCAGCATGTCCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis