Browse Element(s) Details


Os.45041.1.S1_x_at

Description gb:NM_184884.1
DB_XREF= gi:34896857
GEN=OSJNBa0067E01.2
TID=Os.45041.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45041 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ankyrin (OSJNBa0067E01.2), mRNA.
PROD=putative ankyrin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4762011/11TPR Domain containing protein
LOC_Os03g476405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47590Os.28943.1.S1_x_at2/113+26883866..26887103retrotransposon protein, putative, unclassified
LOC_Os03g47600NANA3+26887719..26894493retrotransposon protein, putative, unclassified
LOC_Os03g47604NANA3+26898949..26899639NA
LOC_Os03g47610Os.18490.3.S1_at7/113+26901226..26906905Thiamine biosynthesis protein thiC, putative, expressed
LOC_Os03g47614Os.33602.1.S1_at7/113+26910065..26910663hypothetical protein
LOC_Os03g47620Os.45041.1.S1_x_at11/113+26911878..26919392TPR Domain containing protein
LOC_Os03g47629NANA3+26920979..26921203hypothetical protein
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein
LOC_Os03g47650OsAffx.22672.1.S1_at10/113+26937495..26944710TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45041.1.S1_x_at--461--2391Chr03:26915631..26916073 (25 bp)
AAACTCCTTGTGAAGGCTGGTGCTA
LOC_Os03g47620
Os.45041.1.S1_x_at--285--10751Chr03:26916083..26916107 (25 bp)
TTGCAACTCCTGATACTCCATTGAA
LOC_Os03g47620
Os.45041.1.S1_x_at--88--2571Chr03:26916129..26916153 (25 bp)
AACTGAGTGTGTTGCATACTTGCTG
LOC_Os03g47620
Os.45041.1.S1_x_at--704--331Chr03:26916144..26916168 (25 bp)
ATACTTGCTGGAGATCACCACAGTT
LOC_Os03g47620
Os.45041.1.S1_x_at--721--2992Chr03:26934625..26934649 (25 bp)
AATGAAACTTGATCCTGCAGATGCC
LOC_Os03g47640
Os.45041.1.S1_x_at--594--2492Chr03:26934662..26934686 (25 bp)
AACAGGAGCCTTTGCCATCTGAGAA
LOC_Os03g47640
Os.45041.1.S1_x_at--230--4131Chr03:26918891..26918915 (25 bp)
CGCAGGAGGCTTTGCTGGATGCTAA
LOC_Os03g47620
Os.45041.1.S1_x_at--650--10152Chr03:26934761..26934785 (25 bp)
TATCGCAAAGGATGTGCCCACATGG
LOC_Os03g47640
Os.45041.1.S1_x_at--526--4552Chr03:26934776..26934890 (25 bp)
GCCCACATGGCACTCAAGGAATACG
LOC_Os03g47640
Os.45041.1.S1_x_at--200--4932Chr03:26934896..26934920 (25 bp)
GCTTGTACTGCATTCATGGCTGGAA
LOC_Os03g47640
Os.45041.1.S1_x_at--221--8331Chr03:26919104..26919128 (25 bp)
GGCTGGAACAAAGCTCAATCCTTTA
LOC_Os03g47620
Target Sequence 
AAACTCCTTGTGAAGGCTGGTGCTATTTATAATCTTGCAACTCCTGATACTCCATTGAAGATAGCAACTAGAAATGGCTT
AACTGAGTGTGTTGCATACTTGCTGGAGATCACCACAGTTAAACTAAGTGAACATGACAAAGGAAGTGATGGAGACAGAA
AATCTAAGCTGAAATTACATGGTGGAAAAGCATTTGAGGAGGGGGACTATGCTGGTGCAATCATATTTTACACCGAGGCA
ATGAAACTTGATCCTGCAGATGCCACACTGTATTCAAACAGGAGCCTTTGCCATCTGAGAAGTGGTGCAGCGCAGGAGGC
TTTGCTGGATGCTAATGATTGCATAAAACTCAAGCCAGAGTGGACTAAAGGTCACTATCGCAAAGGATGTGCCCACATGG
CACTCAAGGAATACGAAGAAGCTTGTACTGCATTCATGGCTGGAACAAAGCTCAATCCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45041.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis