Browse Element(s) Details


Os.45248.1.S1_at

Description gb:NM_184597.1
DB_XREF= gi:34896283
GEN=OSJNBa0015K03.1
TID=Os.45248.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45248 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0015K03.1), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2813011/11F-box protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28090Os.52831.1.S1_at11/113+16130137..16132316Pectinesterase family protein, expressed
LOC_Os03g28100NANA3+16133247..16134642hypothetical protein
LOC_Os03g28110NANA3+16137629..16141894retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g28120OsAffx.16146.2.S1_at11/113+16142751..16145812hypothetical protein
LOC_Os03g28120Os.52782.1.S1_at1/113+16142751..16145812hypothetical protein
LOC_Os03g28130Os.45248.1.S1_at11/113+16150093..16151610F-box protein, putative, expressed
LOC_Os03g28140OsAffx.25265.2.S1_x_at10/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os03g28140OsAffx.6175.1.S1_at2/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45248.1.S1_at--377--8631Chr03:16150824..16150848 (25 bp)
TGGTGGCCACCAACATGCAGCGCAG
LOC_Os03g28130
Os.45248.1.S1_at--297--1651Chr03:16150801..16150825 (25 bp)
AGCGCGTCGAAGCAGTACTCCTCGG
LOC_Os03g28130
Os.45248.1.S1_at--879--3991Chr03:16150797..16150821 (25 bp)
CGTCGAAGCAGTACTCCTCGGTGGT
LOC_Os03g28130
Os.45248.1.S1_at--280--551Chr03:16150663..16150687 (25 bp)
ATCCTCCCGGTCTACTTCGAGTACT
LOC_Os03g28130
Os.45248.1.S1_at--340--6091Chr03:16150588..16150612 (25 bp)
GAGTACCTCGACACGGCGAGCCTGC
LOC_Os03g28130
Os.45248.1.S1_at--657--8411Chr03:16150453..16150477 (25 bp)
GGCCGCCTCATGGTCTGCGTGAGCT
LOC_Os03g28130
Os.45248.1.S1_at--123--9631Chr03:16150407..16150431 (25 bp)
TCATGTGCGACGTCGGCAGCAACCA
LOC_Os03g28130
Os.45248.1.S1_at--867--9291Chr03:16150371..16150395 (25 bp)
TCCCCAAGTGCGTCAATGGCGATGG
LOC_Os03g28130
Os.45248.1.S1_at--690--8471Chr03:16150355..16150379 (25 bp)
TGGCGATGGAGAGGTCAACGACTTC
LOC_Os03g28130
Os.45248.1.S1_at--1154--8531Chr03:16150349..16150373 (25 bp)
TGGAGAGGTCAACGACTTCTTGGCC
LOC_Os03g28130
Os.45248.1.S1_at--297--7091Chr03:16150342..16150366 (25 bp)
GTCAACGACTTCTTGGCCGCTTTCT
LOC_Os03g28130
Target Sequence 
TGGTGGCCACCAACATGCAGCGCAGCGCGTCGAAGCAGTACTCCTCGGTGGTGGTCGCCGCGTCGTCCGACGGCGGCGAC
GCCGTGGCCTACTTCCTGAGCCACTCCGGCACGGTGGTCGCCTGCGACACGGCGCGCCGCACGTTCGCCGAGCTCCCCCG
CATCCTCCCGGTCTACTTCGAGTACTCCATCGACGTCGTGGCCTGCGACGGCGCCGCCTACGCCGTCGTGCTGGCGGAGT
ACCTCGACACGGCGAGCCTGCGGGTGTGGGGGTTCGCCGGCGGCGCGTGGAGGCAGGTGGCCGCCATGCCGCCGGCCATG
TCGCACGCGTTCCACGGCAAGAAGGCCGACATCAACTGCGTCGGCCACGGCGGCCGCCTCATGGTCTGCGTGAGCTCCGG
CGAGGCCAACGGCTGCTTCATGTGCGACGTCGGCAGCAACCAGTGGGAGGAGCTCCCCAAGTGCGTCAATGGCGATGGAG
AGGTCAACGACTTCTTGGCCGCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis