Browse Element(s) Details


Os.52831.1.S1_at

Description gb:AK069492.1
DB_XREF= gi:32979516
TID=Os.52831.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021B13, full insert sequence.
FL= gb:AK069492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2809011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28060OsAffx.15837.1.S1_at7/113+16109096..16112058transposon protein, putative, Mutator sub-class
LOC_Os03g28070OsAffx.27021.1.S1_at10/113+16112355..16113535hypothetical protein
LOC_Os03g28080NANA3+16114718..16115731Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g28090Os.52831.1.S1_at11/113+16130137..16132316Pectinesterase family protein, expressed
LOC_Os03g28100NANA3+16133247..16134642hypothetical protein
LOC_Os03g28110NANA3+16137629..16141894retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g28120OsAffx.16146.2.S1_at11/113+16142751..16145812hypothetical protein
LOC_Os03g28120Os.52782.1.S1_at1/113+16142751..16145812hypothetical protein
LOC_Os03g28130Os.45248.1.S1_at11/113+16150093..16151610F-box protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52831.1.S1_at--73--10631Chr03:16131781..16131805 (25 bp)
TTCGTGCTGCACCACAGCCAGGTGG
LOC_Os03g28090
Os.52831.1.S1_at--847--971Chr03:16131905..16131929 (25 bp)
AGGAGCACGCGAGGACGATCGTGAT
LOC_Os03g28090
Os.52831.1.S1_at--1002--8831Chr03:16131938..16131962 (25 bp)
TGATCGGAGGGTTCGTGCACGCGCA
LOC_Os03g28090
Os.52831.1.S1_at--1109--2451Chr03:16132024..16132048 (25 bp)
AACAGCGGGCAAGGCGCCAACTCGA
LOC_Os03g28090
Os.52831.1.S1_at--823--2951Chr03:16132093..16132117 (25 bp)
AAGGCCATGCAGTTCACGGTGGGCC
LOC_Os03g28090
Os.52831.1.S1_at--431--651Chr03:16132099..16132123 (25 bp)
ATGCAGTTCACGGTGGGCCGCTTCC
LOC_Os03g28090
Os.52831.1.S1_at--1106--9671Chr03:16132163..16132187 (25 bp)
TCACGATAGGCCTCTTCGGTGGCTA
LOC_Os03g28090
Os.52831.1.S1_at--800--8491Chr03:16132182..16132206 (25 bp)
TGGCTAGCTCGCTCATCCATGCGTA
LOC_Os03g28090
Os.52831.1.S1_at--864--4791Chr03:16132188..16132212 (25 bp)
GCTCGCTCATCCATGCGTACGTGTG
LOC_Os03g28090
Os.52831.1.S1_at--452--1911Chr03:16132206..16132230 (25 bp)
ACGTGTGTATGTTGATGCGTGCTAG
LOC_Os03g28090
Os.52831.1.S1_at--478--2971Chr03:16132265..16132289 (25 bp)
AATGGTTACATGTGGAGCAAGCAGA
LOC_Os03g28090
Target Sequence 
TTCGTGCTGCACCACAGCCAGGTGGTCGCCGACGAGGACTTCGCCGGCGCCGGCGGCGGGAGCAGCAACACGTCGTCGTC
GTCGGGGGCGGCGCCGAGGCTGGCGTACCTGGGGCGGCCGTGGAAGGAGCACGCGAGGACGATCGTGATGGAGTCGGTGA
TCGGAGGGTTCGTGCACGCGCAGGGGTACATGCCGTGGGAGGGGAAGGACAACCTGGGCGAGGCGTTCTACGGGGAGTAC
GGCAACAGCGGGCAAGGCGCCAACTCGACGGGGAGGATGGAGATGCGGGGGTTCCACGTGCTGGACAGGGAGAAGGCCAT
GCAGTTCACGGTGGGCCGCTTCCTGCACGGCGCCGACTGGATCCCGGAGACCGGCACGCCCGTCACGATAGGCCTCTTCG
GTGGCTAGCTCGCTCATCCATGCGTACGTGTGTATGTTGATGCGTGCTAGGTGGGGGGTTGTGGGGTTAAATTCGTATGT
ACAAAATGGTTACATGTGGAGCAAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis