Browse Element(s) Details


Os.45721.1.S1_s_at

Description gb:NM_183746.1
DB_XREF= gi:34894619
GEN=P0028G04.6
TID=Os.45721.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0028G04.6 (P0028G04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0028G04.6 (P0028G04.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g248508/11hypothetical protein
LOC_Os03g302108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24790Os.15250.1.S1_at11/118+14875922..14876851membrane protein, putative, expressed
LOC_Os08g24800OsAffx.17134.1.S1_at10/118+14878319..14879689hypothetical protein
LOC_Os08g24810OsAffx.17135.1.S1_at11/118+14881776..14883404hypothetical protein
LOC_Os08g24820OsAffx.29333.1.S1_at11/118+14884090..14884524hypothetical protein
LOC_Os08g24830OsAffx.29334.1.S1_at11/118+14887061..14888317F-box domain containing protein
LOC_Os08g24840OsAffx.29335.1.S1_at10/118+14893742..14894269hypothetical protein
LOC_Os08g24850Os.45721.1.S1_s_at8/118+14898741..14899461hypothetical protein
LOC_Os08g24850Os.45721.1.S1_x_at1/118+14898741..14899461hypothetical protein
LOC_Os08g24850OsAffx.25377.2.S1_x_at1/118+14898741..14899461hypothetical protein
LOC_Os08g24860NANA8+14911384..14914692transposon protein, putative, unclassified
LOC_Os08g24870NANA8+14915336..14921491transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45721.1.S1_s_at--977--3518Chr08:14899035..14899059 (25 bp)
ATCAAGAACACGGAGAACACATCCT
LOC_Os08g24850
Os.45721.1.S1_s_at--116--97318Chr08:14899036..14899060 (25 bp)
TCAAGAACACGGAGAACACATCCTT
LOC_Os08g24850
Os.45721.1.S1_s_at--794--32318Chr08:14899037..14899061 (25 bp)
CAAGAACACGGAGAACACATCCTTT
LOC_Os08g24850
Os.45721.1.S1_s_at--320--27517Chr08:14899038..14899062 (25 bp)
AAGAACACGGAGAACACATCCTTTT
LOC_Os08g24850
Os.45721.1.S1_s_at--633--14118Chr08:14899039..14899063 (25 bp)
AGAACACGGAGAACACATCCTTTTC
LOC_Os08g24850
Os.45721.1.S1_s_at--82--55118Chr08:14899040..14899064 (25 bp)
GAACACGGAGAACACATCCTTTTCT
LOC_Os08g24850
Os.45721.1.S1_s_at--1084--24518Chr08:14899041..14899065 (25 bp)
AACACGGAGAACACATCCTTTTCTT
LOC_Os08g24850
Os.45721.1.S1_s_at--1117--21718Chr08:14899042..14899066 (25 bp)
ACACGGAGAACACATCCTTTTCTTC
LOC_Os08g24850
Target Sequence 
ATCAAGAACACGGAGAACACATCCTTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45721.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis