Browse Element(s) Details


OsAffx.29334.1.S1_at

Description tigr:9636.m02432
TID=OsAffx.29334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2483011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24770OsAffx.29332.1.S1_at2/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24770OsAffx.10096.1.S1_x_at1/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24780OsAffx.13811.1.S1_at1/118+14870386..14873620Protein kinase domain containing protein
LOC_Os08g24790Os.15250.1.S1_at11/118+14875922..14876851membrane protein, putative, expressed
LOC_Os08g24800OsAffx.17134.1.S1_at10/118+14878319..14879689hypothetical protein
LOC_Os08g24810OsAffx.17135.1.S1_at11/118+14881776..14883404hypothetical protein
LOC_Os08g24820OsAffx.29333.1.S1_at11/118+14884090..14884524hypothetical protein
LOC_Os08g24830OsAffx.29334.1.S1_at11/118+14887061..14888317F-box domain containing protein
LOC_Os08g24840OsAffx.29335.1.S1_at10/118+14893742..14894269hypothetical protein
LOC_Os08g24850Os.45721.1.S1_s_at8/118+14898741..14899461hypothetical protein
LOC_Os08g24850Os.45721.1.S1_x_at1/118+14898741..14899461hypothetical protein
LOC_Os08g24850OsAffx.25377.2.S1_x_at1/118+14898741..14899461hypothetical protein
LOC_Os08g24860NANA8+14911384..14914692transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29334.1.S1_at--799--4391Chr08:14887626..14887650 (25 bp)
GCCAAGAGCTGCACCCGGTGAGGCT
LOC_Os08g24830
OsAffx.29334.1.S1_at--410--1811Chr08:14887614..14887638 (25 bp)
ACCCGGTGAGGCTCGAGATGGATCT
LOC_Os08g24830
OsAffx.29334.1.S1_at--714--1311Chr08:14887599..14887623 (25 bp)
AGATGGATCTCACGAGGACCAGCCG
LOC_Os08g24830
OsAffx.29334.1.S1_at--1149--5791Chr08:14887285..14887309 (25 bp)
GACCGGAAACCCCTGGAGAGATCCG
LOC_Os08g24830
OsAffx.29334.1.S1_at--742--6011Chr08:14887270..14887294 (25 bp)
GAGAGATCCGCCCTGATCAGGAGAA
LOC_Os08g24830
OsAffx.29334.1.S1_at--1100--4171Chr08:14887260..14887284 (25 bp)
CCCTGATCAGGAGAAGCATGGACGT
LOC_Os08g24830
OsAffx.29334.1.S1_at--150--1911Chr08:14887239..14887263 (25 bp)
ACGTGCCGGCTTCCAACGTGCTGGA
LOC_Os08g24830
OsAffx.29334.1.S1_at--1135--2571Chr08:14887225..14887249 (25 bp)
AACGTGCTGGACACTTTCCGGCGGC
LOC_Os08g24830
OsAffx.29334.1.S1_at--518--9631Chr08:14887130..14887154 (25 bp)
TCAGTGCTTTGGATTTGGAGGGCTC
LOC_Os08g24830
OsAffx.29334.1.S1_at--43--8011Chr08:14887114..14887138 (25 bp)
GGAGGGCTCCAAGATTTGATCGTCT
LOC_Os08g24830
OsAffx.29334.1.S1_at--476--6391Chr08:14887097..14887121 (25 bp)
GATCGTCTTGTTGAAATCTTTCGTG
LOC_Os08g24830
Target Sequence
GCCAAGAGCTGCACCCGGTGAGGCTCGAGATGGATCTCACGAGGACCAGCCGCTTCGTGGCCCGCGTTCTGCTGGAGTGC
GACGGGAGGCTGCTCATGGCGGACAGGCACCGCCACGGCGGCGACGCCGGCTACCACGAGTACAGGGTGTACGCCCTGGA
GCGCGACGCCTCCTGCGGCGATTGGCGCTGGTCGCCGGTCACGCGGCTCGACGGCCACGTCCTCTTCCTCGGCGCCGGCT
GCTGCAGGGCTCTCCCGGTGACCGGGCGCGACAGGGTGAAGGACGGCAACGTCGTCTTCCTCGACGACAGCGCGGAGATC
ACGGCCGTGGTCACCGTCGACGACCGGAAACCCCTGGAGAGATCCGCCCTGATCAGGAGAAGCATGGACGTGCCGGCTTC
CAACGTGCTGGACACTTTCCGGCGGCGTGGCGGCGGCGGCGGTGGCGGCGCCGACAGGCCTGCACCGCCGGCGGCATGCA
TGGCAGGGAGAAGGAATCAGTGCTTTGGATTTGGAGGGCTCCAAGATTTGATCGTCTTGTTGAAATCTTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis