Browse Element(s) Details


OsAffx.13811.1.S1_at

Description tigr:9632.m01278
TID=OsAffx.13811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1402011/11hypothetical protein
LOC_Os08g247801/11Protein kinase domain containing protein
LOC_Os06g301101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13960Os.38764.1.S1_x_at4/114+7777148..7783222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13960Os.53292.1.S1_x_at3/114+7777148..7783222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13960Os.53292.1.S1_at3/114+7777148..7783222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13970Os.46314.2.S1_x_at1/114+7786228..7788855retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13980NANA4+7789527..7790534hypothetical protein
LOC_Os04g13990Os.45173.5.S1_x_at4/114+7793690..7800117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13990Os.45173.1.S1_x_at1/114+7793690..7800117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14000NANA4+7802468..7805032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14010NANA4+7805849..7806175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14020OsAffx.13811.1.S1_at11/114+7807722..7808852hypothetical protein
LOC_Os04g14040OsAffx.13764.1.S1_at1/114+7813796..7816633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14040OsAffx.19815.1.S1_at1/114+7813796..7816633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14050Os.24831.1.S1_x_at9/114+7818800..7821522retrotransposon protein, putative, unclassified
LOC_Os04g14050Os.24831.3.S1_x_at9/114+7818800..7821522retrotransposon protein, putative, unclassified
LOC_Os04g14050Os.53142.1.S1_at3/114+7818800..7821522retrotransposon protein, putative, unclassified
LOC_Os04g14050Os.24831.4.S1_x_at3/114+7818800..7821522retrotransposon protein, putative, unclassified
LOC_Os04g14050Os.24831.3.S1_s_at1/114+7818800..7821522retrotransposon protein, putative, unclassified
LOC_Os04g14050Os.23706.1.A1_x_at1/114+7818800..7821522retrotransposon protein, putative, unclassified
LOC_Os04g14060Os.53142.1.S1_at3/114+7826326..7828065retrotransposon protein, putative, unclassified
LOC_Os04g14060Os.23706.1.A1_x_at1/114+7826326..7828065retrotransposon protein, putative, unclassified
LOC_Os04g14060Os.47004.1.S1_at1/114+7826326..7828065retrotransposon protein, putative, unclassified
LOC_Os04g14070OsAffx.13882.2.S1_at11/114+7829628..7830184pol, putative

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13811.1.S1_at--1143--9331Chr04:7808764..7808788 (25 bp)
TCGCGCACGCGGCTGAACAGAGGAG
LOC_Os04g14020
OsAffx.13811.1.S1_at--571--9131Chr04:7808726..7808750 (25 bp)
TGCGACGGCCCGAGCCAGAACGGCT
LOC_Os04g14020
OsAffx.13811.1.S1_at--390--4571Chr04:7807919..7808211 (25 bp)
GCGCGCGGTTCTGGTTCAGTGTACA
LOC_Os04g14020
OsAffx.13811.1.S1_at--625--10611Chr04:7807911..7807935 (25 bp)
TTCTGGTTCAGTGTACAGGCGCGGC
LOC_Os04g14020
OsAffx.13811.1.S1_at--845--6731Chr04:7807906..7807930 (25 bp)
GTTCAGTGTACAGGCGCGGCATGAT
LOC_Os04g14020
OsAffx.13811.1.S1_at--202--7032Chr08:14870260..14870284 (25 bp)
GTACAGGCGCGGCATGATTGCCTAC
NONE
OsAffx.13811.1.S1_at--168--3953Chr05:10419383..10419407 (25 bp)
CGGCATGATTGCCTACGCGGTAGTA
NONE
OsAffx.13811.1.S1_at--765--74Chr05:10419390..10419414 (25 bp)
ATTGCCTACGCGGTAGTATGCAGGA
NONE
OsAffx.13811.1.S1_at--858--10132Chr05:10419406..10419430 (25 bp)
TATGCAGGAGAGGTCTCGCTAGCTG
NONE
OsAffx.13811.1.S1_at--891--8093Chr12:18692838..18693077 (25 bp)
GGACGCGATGGCGACAAGAGCGACG
NONE
OsAffx.13811.1.S1_at--1151--4053Chr08:14870405..14870680 (25 bp)
CGATGGGCAGTGGTAACGGCTTGGA
LOC_Os08g24780
Target Sequence 
TCGCGCACGCGGCTGAACAGAGGAGCAGCGCGCGGCGGTGCGACGGCCCGAGCCAGAACGGCTCGGCGCGCGGTTCTGGT
TCAGTGTACAGGCGCGGCATGATTGCCTACGCGGTAGTATGCAGGAGAGGTCTCGCTAGCTGGAGAAAGGGGCGCCGCAT
TACCCAGCGGTCGCAACCGGGGGTGACAAGATGGAGACGCGACGGGGACGCGATGGCGACAAGAGCGACGGCGATGGGCA
GTGGTAACGGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis