Browse Element(s) Details


Os.45906.1.S1_at

Description gb:CA766130
DB_XREF= gi:27548224
DB_XREF=AF53-Rpf_10_D14_T7_057.ab1
CLONE=C0003542
TID=Os.45906.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0699H05.17 (P0699H05.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g583906/11HAD superfamily phosphatase, TIGR01668 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein
LOC_Os01g58370OsAffx.11647.1.S1_at11/111+34055156..34055398hypothetical protein
LOC_Os01g58380Os.9992.1.S1_a_at11/111+34057226..340598583-hydroxybutyryl-CoA dehydrogenase, putative, expressed
LOC_Os01g58390Os.45906.1.S1_at6/111+34060342..34062309HAD superfamily phosphatase, TIGR01668 containing protein
LOC_Os01g58400Os.50275.1.S1_at11/111+34067498..34072706Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g58410NANA1+34074835..34077087hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45906.1.S1_at--108--1691Chr01:34061268..34061288 (21 bp)
AGCCTCAAATCTTGTTCTGGTTGGT
LOC_Os01g58390
Os.45906.1.S1_at--810--7911Chr01:34061165..34061189 (25 bp)
GGTTGGTGATCGATACTTTACTGAC
LOC_Os01g58390
Os.45906.1.S1_at--233--8991Chr01:34060444..34060468 (25 bp)
TGAAGCATACCTTATCAGTTATTGG
LOC_Os01g58390
Os.45906.1.S1_at--63--8251Chr01:34060409..34060433 (25 bp)
GGCACAGACCAATTAAGCACCCGTT
LOC_Os01g58390
Os.45906.1.S1_at--1020--4791Chr01:34060384..34060408 (25 bp)
GCTCCCTGATGCAAGACGAATAGTA
LOC_Os01g58390
Os.45906.1.S1_at--975--331Chr01:34060348..34060372 (25 bp)
ATACAATGACCCTATGGCACCTGCA
LOC_Os01g58390
Os.45906.1.S1_at--381--2231Chr01:34060316..34060340 (25 bp)
ACAATTATGTTTTTGGCACCAGTTA
NONE
Os.45906.1.S1_at--259--4971Chr01:34060301..34060325 (25 bp)
GCACCAGTTAATAGTACAGTCGGCT
NONE
Os.45906.1.S1_at--668--3451Chr01:34060285..34060309 (25 bp)
CAGTCGGCTGATCCATTGAGTTCAC
NONE
Os.45906.1.S1_at--86--7151Chr01:34060172..34060196 (25 bp)
GTCTTTTGGTGGCTTTCTGAATCAG
NONE
Os.45906.1.S1_at--467--1271Chr01:34060079..34060103 (25 bp)
AGATCATGATGGCTTTTGCTGGGTT
NONE
Target Sequence 
AGCCTCAAATCTTGTTCTGGTTGGTGATCGATACTTTACTGACGTTGTTTATGGAAACAGGAATGGTTTTCTTACTGTTC
TTACAGAACCATTGAATTTTGCAAATGAATCTTACATTGTCAGACAGGTTAGGAATTTTGAAGCATACCTTATCAGTTAT
TGGTACAGGAAAGGGCACAGACCAATTAAGCACCCGTTGCTCCCTGATGCAAGACGAATAGTAAAGTTTGATCCATACAA
TGACCCTATGGCACCTGCAGCATAGCACAATTATGTTTTTGGCACCAGTTAATAGTACAGTCGGCTGATCCATTGAGTTC
ACTGTATTTTTTTTTCTGAATCAGTATGAGCGGATGTTTACAGTCTATAGTTGAGCAGAATATAGAGAAGAGTATGTTAT
GACTAAGGTTGTCTTTTGGTGGCTTTCTGAATCAGTATGAGCGGATGTTTACAGTCTATAGTTGAGCAGAATATAGGTCA
AGCTATATTGTGCTTATAGTGTAAGATCATGATGGCTTTTGCTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis