Browse Element(s) Details


Os.46018.1.S1_x_at

Description gb:NM_186458.1
DB_XREF= gi:34900001
TID=Os.46018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.19 (P0039H02.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0039H02.19 (P0039H02.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g071409/11hypothetical protein
LOC_Os07g071601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07094OsAffx.24242.3.S1_s_at11/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.3.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.1.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein
LOC_Os07g07140Os.46018.1.S1_x_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07140Os.46018.1.S1_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07150Os.32042.2.S1_x_at11/117+3537843..3540491expressed protein
LOC_Os07g07150Os.32042.1.S1_at9/117+3537843..3540491expressed protein
LOC_Os07g07160OsAffx.28320.1.S1_at11/117+3543079..3544314hypothetical protein
LOC_Os07g07160Os.46018.1.S1_x_at1/117+3543079..3544314hypothetical protein
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46018.1.S1_x_at--121--3411Chr07:3527766..3527790 (25 bp)
CAGCATCGCCGATGAACGATCAGGT
LOC_Os07g07140
Os.46018.1.S1_x_at--660--5451Chr07:3527779..3527803 (25 bp)
GAACGATCAGGTGTGCGGCTCATGT
LOC_Os07g07140
Os.46018.1.S1_x_at--333--1891Chr07:3527781..3527805 (25 bp)
ACGATCAGGTGTGCGGCTCATGTGT
LOC_Os07g07140
Os.46018.1.S1_x_at--93--7471Chr07:3527789..3527813 (25 bp)
GTGTGCGGCTCATGTGTGGCTTCAT
LOC_Os07g07140
Os.46018.1.S1_x_at--511--9632Chr07:3544205..3544229 (25 bp)
TCATGTGTGGCTTCATCCTAGCAGT
LOC_Os07g07160
Os.46018.1.S1_x_at--491--8492Chr07:3527805..3527829 (25 bp)
TGGCTTCATCCTAGCAGTTGCTGTG
LOC_Os07g07140
Os.46018.1.S1_x_at--1081--1231Chr07:3527820..3527844 (25 bp)
AGTTGCTGTGATCTGGCTGCTCCTT
LOC_Os07g07140
Os.46018.1.S1_x_at--161--8851Chr07:3527828..3527852 (25 bp)
TGATCTGGCTGCTCCTTTCCTACTT
LOC_Os07g07140
Os.46018.1.S1_x_at--637--10671Chr07:3527844..3527868 (25 bp)
TTCCTACTTCAGCTGCGATGACAAG
LOC_Os07g07140
Os.46018.1.S1_x_at--1052--3651Chr07:3527850..3528313 (25 bp)
CTTCAGCTGCGATGACAAGTATATC
NONE
Os.46018.1.S1_x_at--753--4771Chr07:3527855..3528318 (25 bp)
GCTGCGATGACAAGTATATCGGAAT
NONE
Target Sequence 
CAGCATCGCCGATGAACGATCAGGTGTGCGGCTCATGTGTGGCTTCATCCTAGCAGTTGCTGTGATCTGGCTGCTCCTTT
CCTACTTCAGCTGCGATGACAAGTATATCGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46018.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis