Browse Element(s) Details


Os.46021.1.S1_at

Description gb:CF307689
DB_XREF= gi:33679450
DB_XREF=ABF--01-D09.g1
CLONE=ABF--01-D09
TID=Os.46021.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.46021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0006H05.28 (OSJNBb0006H05.28), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g466008/11seed maturation protein PM41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46570Os.38060.2.S1_x_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.38060.1.S1_a_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.57322.1.S1_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46590Os.26738.1.S1_at10/111+26849631..26854149peptidase M50 family protein, putative, expressed
LOC_Os01g46580Os.22471.2.S1_x_at11/111+26853580..26858468expressed protein
LOC_Os01g46580Os.22471.2.S1_at11/111+26853580..26858468expressed protein
LOC_Os01g46600Os.46021.1.S1_at8/111+26858869..26859332seed maturation protein PM41, putative, expressed
LOC_Os01g46610Os.12610.1.S1_at11/111+26859919..26863985Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46632Os.45173.1.S1_x_at1/111+26879163..26882391retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46021.1.S1_at--446--9351Chr01:26859368..26859392 (25 bp)
TCGCAGCCCGGCTATATATACGCTT
NONE
Os.46021.1.S1_at--825--10191Chr01:26859356..26859380 (25 bp)
TATATATACGCTTCTCCCGGCGAGG
NONE
Os.46021.1.S1_at--181--3411Chr01:26859322..26859346 (25 bp)
CAGCAGCCACACGAGACTACGAGAG
NONE
Os.46021.1.S1_at--42--5871Chr01:26859269..26859293 (25 bp)
GAGCCAAGCCTTTTGCAGCAATGTC
LOC_Os01g46600
Os.46021.1.S1_at--846--7611Chr01:26859012..26859036 (25 bp)
GGGACCGGCGCGTGATATCGTTCAC
LOC_Os01g46600
Os.46021.1.S1_at--534--511Chr01:26858996..26859020 (25 bp)
ATCGTTCACGTGAAGACCGTGCGGT
LOC_Os01g46600
Os.46021.1.S1_at--931--2971Chr01:26858965..26858989 (25 bp)
AATGGTGCTGCTACTTTGTTGTTGT
LOC_Os01g46600
Os.46021.1.S1_at--783--9891Chr01:26858954..26858978 (25 bp)
TACTTTGTTGTTGTACGTGCGCCTA
LOC_Os01g46600
Os.46021.1.S1_at--300--1911Chr01:26858940..26858964 (25 bp)
ACGTGCGCCTAGAGTGTTCTTCTGT
LOC_Os01g46600
Os.46021.1.S1_at--649--6731Chr01:26858925..26858949 (25 bp)
GTTCTTCTGTTTGTAAGAGCACCAT
LOC_Os01g46600
Os.46021.1.S1_at--230--5091Chr01:26858907..26858931 (25 bp)
GCACCATGTGTGTGAGCCTGTAACA
LOC_Os01g46600
Target Sequence 
TCGCAGCCCGGCTATATATACGCTTCTCCCGGCGAGGCGTCACCCTCAGCAGCCACACGAGACTACGAGAGTTCAGCGTA
AAGGAAGGAAGCAGCAGCCGAGCCAAGCCTTTTGCAGCAATGTCGGGGGCGCAGGGCGCGCAGCCGATGGGCGAGACGAC
GCCGACGACGTACGAGTCGGTGGGCGGCGGGGAGAACCGCACGCGCACGGACCTGCGTTCGCGGGAGGACCAGGGCGCCA
TCCAGATCGACAAGGTGCAGGACAAGGTCGACGAGCCCGCCGCGCGCAAGGTGGACGACCGCGCCTTCGACGCCAAGCAG
GTCGGCCACGGCGCCGGCGCCGACGCCGGGGCCACCGGGACCGGCGCGTGATATCGTTCACGTGAAGACCGTGCGGTAGA
AAGAATGGTGCTGCTACTTTGTTGTTGTACGTGCGCCTAGAGTGTTCTTCTGTTTGTAAGAGCACCATGTGTGTGAGCCT
GTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis