Browse Element(s) Details


Os.46049.1.S1_at

Description gb:CB679471
DB_XREF= gi:29683196
DB_XREF=OSJNEf03A04.f
CLONE=OSJNEf03A04
TID=Os.46049.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase APK1B, SerineThreonine protein kinase (B1085F01.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4187011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41850Os.53217.1.S1_x_at1/111+24028928..24030892transposon protein, putative, unclassified
LOC_Os01g41850Os.38172.1.S1_x_at1/111+24028928..24030892transposon protein, putative, unclassified
LOC_Os01g41850Os.43567.1.S1_x_at1/111+24028928..24030892transposon protein, putative, unclassified
LOC_Os01g41860NANA1+24039153..24040084hypothetical protein
LOC_Os01g41870Os.46049.1.S1_at11/111+24054178..24059925protein kinase family protein, putative, expressed
LOC_Os01g41880Os.22776.1.S1_s_at11/111+24067725..24071843Hyaluronan/mRNA binding family protein, expressed
LOC_Os01g41890Os.33928.1.S1_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.4.A1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.1.S1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890OsAffx.24510.1.S1_x_at1/111+24073688..24078561NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46049.1.S1_at--225--5671Chr01:24059369..24059393 (25 bp)
GACATGGTTGTCGATTCTGGCTCTG
LOC_Os01g41870
Os.46049.1.S1_at--464--3851Chr01:24059391..24059415 (25 bp)
CTGTTTCAGCCCCAAGTAGTGATTC
LOC_Os01g41870
Os.46049.1.S1_at--240--6951Chr01:24059457..24059481 (25 bp)
GTAGAGACTGGAGCCCAGCTCGACA
LOC_Os01g41870
Os.46049.1.S1_at--248--5531Chr01:24059505..24059529 (25 bp)
GAAAAAACTCCTACGACGCTCTTAG
LOC_Os01g41870
Os.46049.1.S1_at--331--5051Chr01:24059551..24059575 (25 bp)
GCAGAGCGTCTCACACAGATATTAA
LOC_Os01g41870
Os.46049.1.S1_at--925--2671Chr01:24059575..24059599 (25 bp)
AAGCTCCTTTTCGAAAATCCTGCGA
LOC_Os01g41870
Os.46049.1.S1_at--1156--91Chr01:24059609..24059633 (25 bp)
ATTCGACCATGTATAATTCCCTCAC
LOC_Os01g41870
Os.46049.1.S1_at--501--10091Chr01:24059687..24059711 (25 bp)
TAGGATCAAAGCTTTTCCCTGCCAT
LOC_Os01g41870
Os.46049.1.S1_at--691--9191Chr01:24059706..24059730 (25 bp)
TGCCATGTTTCCCTGGTGTATAGTA
LOC_Os01g41870
Os.46049.1.S1_at--638--3751Chr01:24059764..24059788 (25 bp)
CTCAGTTAGCTTCCGTTTTGTGTAT
LOC_Os01g41870
Os.46049.1.S1_at--698--291Chr01:24059854..24059878 (25 bp)
ATACCTTCAAGGCAAGATCTCTGTA
LOC_Os01g41870
Target Sequence 
GACATGGTTGTCGATTCTGGCTCTGTTTCAGCCCCAAGTAGTGATTCTGGGAGCAGGAGCTGGCGAATGCTGAATGAACA
ACAGAACTGTAGAGACTGGAGCCCAGCTCGACAAGATTCACATCGAGTGGTCGAAGGAAAAAACTCCTACGACGCTCTTA
GGGCTGCCTGGGACAGGAATAAGCAGAGCGTCTCACACAGATATTAAAGCTCCTTTTCGAAAATCCTGCGAAGTTGAGCT
ATTCGACCATGTATAATTCCCTCACCCATTCTTCCTGTCCTCTTTTTGTTTTTTTTACCCCCTGCCTTCTAGTAATTCTA
GGATCAAAGCTTTTCCCTGCCATGTTTCCCTGGTGTATAGTAGAAGTGCTAATAGGTTTACAAGTATATTGAGCTCTCAG
TTAGCTTCCGTTTTGTGTATGATCGGAGGNANTGTGATCCCAGATCAAATAGTTATGCGTAGAATTTCAGTAACTTGATT
ATAATATACCTTCAAGGCAAGATCTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis