Browse Element(s) Details


Os.46074.1.A1_at

Description gb:AK069162.1
DB_XREF= gi:32979186
TID=Os.46074.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008K11, full insert sequence.
FL= gb:AK069162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g052106/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05210Os.11061.1.S1_at11/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05210Os.46074.1.A1_at6/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05220Os.31936.1.S1_at11/1110+2542990..2548420tRNA-guanine transglycosylases, various specificities family protein, expressed
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46074.1.A1_at--929--291Chr10:2540542..2541076 (25 bp)
ATACCACAGGTGCTGCGTGAGGTTA
LOC_Os10g05210
Os.46074.1.A1_at--29--4771Chr10:2541063..2541087 (25 bp)
GCTGCGTGAGGTTACCAGTGATACT
LOC_Os10g05210
Os.46074.1.A1_at--727--8871Chr10:2541103..2541127 (25 bp)
TGATGTGTCCTTTGGGACCATTCTT
LOC_Os10g05210
Os.46074.1.A1_at--496--8091Chr10:2541117..2541141 (25 bp)
GGACCATTCTTCTGCATAGCTGTGC
LOC_Os10g05210
Os.46074.1.A1_at--181--2791Chr10:2541334..2541358 (25 bp)
AAGAGAGGCAATGGCCGCATTCTAA
LOC_Os10g05210
Os.46074.1.A1_at--862--8411Chr10:2541346..2541370 (25 bp)
GGCCGCATTCTAAGCAGGTGCTCTA
LOC_Os10g05210
Os.46074.1.A1_at--1098--6671Chr10:2541384..2541408 (25 bp)
GTTGCGCATGTCATATAGTTAGCCA
NONE
Os.46074.1.A1_at--441--8591Chr10:2541430..2541454 (25 bp)
TGGTAATAAAGCTCCACGTGTGGAC
NONE
Os.46074.1.A1_at--662--1911Chr10:2541445..2541469 (25 bp)
ACGTGTGGACACCTCTGCTTGTTGG
NONE
Os.46074.1.A1_at--803--1751Chr10:2541455..2541479 (25 bp)
ACCTCTGCTTGTTGGGCCATCTTGG
NONE
Os.46074.1.A1_at--122--6811Chr10:2541498..2541522 (25 bp)
GTTTTGAGTGTCACATACTCCTAAG
NONE
Target Sequence 
ATACCACAGGTGCTGCGTGAGGTTACCAGTGATACTATTGGAGCTTGTATATGATGTGTCCTTTGGGACCATTCTTCTGC
ATAGCTGTGCAGAAGCTGCTACTAGTTTGTTGGAGAACCTGTTGGAAGACAGCTTCTGCTTGTTTGTNTAATAAGATCAG
CTTCTAGTTAGTATTACTTATAAGTTGCTGCAGAATTTTGTCGTTTGGCAGCACCGCAGAATTTTTTACTGTGTAGAAGC
TGTAGAACATCTATATATCACTTTTCAATTTGAAGAATTGTAAAGAGAGGCAATGGCCGCATTCTAAGCAGGTGCTCTAT
GGAAAATCCCTAGTTGCGCATGTCATATAGTTAGCCATACTAGTATATAGTAGTATGTTGGTAATAAAGCTCCACGTGTG
GACACCTCTGCTTGTTGGGCCATCTTGGTGGGAGGATTCATTTTATGTTTTGAGTGTCACATACTCCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46074.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis