Browse Element(s) Details


Os.4608.3.A1_a_at

Description gb:CB659494
DB_XREF= gi:29663219
DB_XREF=OSJNEc16I15.r
CLONE=OSJNEc16I15
TID=Os.4608.3
CNT=47
FEA=EST
TIER=Stack
STK=13
UG=Os.4608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) HOS59 mRNA, complete cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4386011/11Homeobox protein knotted-1-like 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43820OsAffx.5095.1.S1_at10/116+26387053..26390622hypothetical protein
LOC_Os06g43830NANA6+26392281..26392499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed
LOC_Os06g43850Os.12365.1.S1_at10/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43850Os.57459.1.S1_x_at1/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43860Os.4608.3.A1_a_at11/116+26410491..26413838Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os06g43870OsAffx.15915.1.S1_at11/116+26422833..26426811expressed protein
LOC_Os06g43880Os.50648.1.S1_at11/116+26434370..26438320homogentisic acid geranylgeranyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4608.3.A1_a_at--672--3791Chr06:26411228..26411252 (25 bp)
CTCGCTTGGTGCAGGAAACAGGGTT
LOC_Os06g43860
Os.4608.3.A1_a_at--1152--2511Chr06:26411168..26411192 (25 bp)
AACGTAAACGGAACTGGCACAGCAA
LOC_Os06g43860
Os.4608.3.A1_a_at--431--2571Chr06:26411157..26411181 (25 bp)
AACTGGCACAGCAATCCTGCTTCAT
LOC_Os06g43860
Os.4608.3.A1_a_at--505--591Chr06:26410922..26410946 (25 bp)
ATGCCAGTATATTTATTGCTCCCAA
LOC_Os06g43860
Os.4608.3.A1_a_at--423--71Chr06:26410908..26410932 (25 bp)
ATTGCTCCCAAGATGGCGATTCGGA
LOC_Os06g43860
Os.4608.3.A1_a_at--1081--7111Chr06:26410827..26410851 (25 bp)
GTCATGTGAAGCTATAGTGCGTATA
LOC_Os06g43860
Os.4608.3.A1_a_at--603--6851Chr06:26410772..26410796 (25 bp)
GTTTGCTGTTGGCTAGTGTGCATTT
LOC_Os06g43860
Os.4608.3.A1_a_at--408--10051Chr06:26410746..26410770 (25 bp)
TAGTTGGGACGTGCTGGCTGTCTCT
LOC_Os06g43860
Os.4608.3.A1_a_at--219--9871Chr06:26410720..26410744 (25 bp)
TACAGCTCGGTACAACCATGTATTT
LOC_Os06g43860
Os.4608.3.A1_a_at--461--9151Chr06:26410646..26410670 (25 bp)
TGCGATCCCCATATGTTGTTGTAAT
LOC_Os06g43860
Os.4608.3.A1_a_at--501--211Chr06:26410616..26410640 (25 bp)
ATATTGATGACCATGCTGCAACGGC
LOC_Os06g43860
Target Sequence 
CTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAACAGATCAATAATTGGTTTATCAACCAACGTAAACGGAACTGGCAC
AGCAATCCTGCTTCATCCTCATCAGACAAAAGCAAGAGAAAAAGGTGATGGCAAGGCCGAGCAATCTTGGTAGAACGTGG
TTGGAGAAGAAGTATATATATGTAAATAATGCATCCATTGTGAAGAATGCCAGTATATTTATTGCTCCCAAGATGGCGAT
TCGGACAGAAGCTTCCTGGGGCTAATTTATACGAAAGAAATTATGTCATGTTATAATTTTAGTCATGTGAAGCTATAGTG
CGTATATATAGTGACTTACCAGAGAGTAGTTTTTATGTTTGCTGTTGGCTAGTGTGCATTTGTAGTTGGGACGTGCTGGC
TGTCTCTNTACAGCTCGGTACAACCATGTATTTATAACGTGTTGTGAAGCATATGTTGTAAAATCGTGGAATGGGAGTGT
TNTGCGATCCCCATATGTTGTTGTAATGTTGTATATTGATGACCATGCTGCAACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4608.3.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis