Browse Element(s) Details


OsAffx.5095.1.S1_at

Description tigr:9634.m04235
TID=OsAffx.5095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4382010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43800Os.12737.1.S1_at11/116+26375117..26378230methyltransferase, putative, expressed
LOC_Os06g43810Os.49529.1.S1_at11/116+26383997..26384661expressed protein
LOC_Os06g43820OsAffx.5095.1.S1_at10/116+26387053..26390622hypothetical protein
LOC_Os06g43830NANA6+26392281..26392499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed
LOC_Os06g43850Os.12365.1.S1_at10/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43850Os.57459.1.S1_x_at1/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43860Os.4608.3.A1_a_at11/116+26410491..26413838Homeobox protein knotted-1-like 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5095.1.S1_at--363--5011NONE
GCAGGAGACATTGCGGGTGTTTAAA
NONE
OsAffx.5095.1.S1_at--217--2391Chr06:26389499..26389523 (25 bp)
AAACATGGCCTTAGAACGAGTACAA
LOC_Os06g43820
OsAffx.5095.1.S1_at--966--10033Chr06:26389575..26389599 (25 bp)
TAGAGAAGAGTAAGAGCACCCGCAA
LOC_Os06g43820
OsAffx.5095.1.S1_at--462--2791Chr06:26390311..26390335 (25 bp)
AAGAGGCGCGCCACGCGAGTAGTAC
LOC_Os06g43820
OsAffx.5095.1.S1_at--847--4611Chr06:26390439..26390463 (25 bp)
GCGAGTACCGGCAAAACCTGTAAAG
LOC_Os06g43820
OsAffx.5095.1.S1_at--392--5731Chr06:26390480..26390504 (25 bp)
GACTGCAAGAGGGTGCAAGCCACCT
LOC_Os06g43820
OsAffx.5095.1.S1_at--723--9011Chr06:26390493..26390517 (25 bp)
TGCAAGCCACCTGGGTGTCCGGCTA
LOC_Os06g43820
OsAffx.5095.1.S1_at--363--8631Chr06:26390504..26390528 (25 bp)
TGGGTGTCCGGCTAGCTGGATTCCT
LOC_Os06g43820
OsAffx.5095.1.S1_at--1109--9991Chr06:26390516..26390540 (25 bp)
TAGCTGGATTCCTGGGCATGTGGCC
LOC_Os06g43820
OsAffx.5095.1.S1_at--589--8271Chr06:26390530..26390554 (25 bp)
GGCATGTGGCCCATGTGGCCTCTCT
LOC_Os06g43820
OsAffx.5095.1.S1_at--330--4191Chr06:26390557..26390581 (25 bp)
CCCTCTCGCTTCCAACTGGATAAAA
LOC_Os06g43820
Target Sequence 
GCAGGAGACATTGCGGGTGTTTAAATGTTCGATGTGACAGGGTGAAAAAATTTAGAGTGGGATCTAAACATGGCCTTAGA
ACGAGTACAATAACAGACTACAAGTTAGCTATAAATACAAGTGAATGTGATAAGAGGGCCTTAGAGAAGAGTAAGAGCAC
CCGCAATGGTAAAAATAAGAGGCGCGCCACGCGAGTAGTACGCGACGCGACGCGGTGGTGGTGGCGAGGTGGTGACGCGC
CGCGAGGCGAGACGGGGGGAAGAAGTGGTGGGCGACGCGACGCGACGCGAGTTCCGGGGCGCGCGCGAGTACCGGCAAAA
CCTGTAAAGAAGCAGAAGGCCGCGCGACTGCAAGAGGGTGCAAGCCACCTGGGTGTCCGGCTAGCTGGATTCCTGGGCAT
GTGGCCCATGTGGCCTCTCTCCCCCTCTCGCTTCCAACTGGATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis