Browse Element(s) Details


OsAffx.15914.1.S1_at

Description tigr:9634.m04232
TID=OsAffx.15914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F6N18.13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4379011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed
LOC_Os06g43770Os.56085.1.S1_at11/116+26345139..26346101expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_at11/116+26354718..26357951expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_x_at11/116+26354718..26357951expressed protein
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43800Os.12737.1.S1_at11/116+26375117..26378230methyltransferase, putative, expressed
LOC_Os06g43810Os.49529.1.S1_at11/116+26383997..26384661expressed protein
LOC_Os06g43820OsAffx.5095.1.S1_at10/116+26387053..26390622hypothetical protein
LOC_Os06g43830NANA6+26392281..26392499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0009416biological_processresponse to light stimulus
GO:0016573biological_processhistone acetylation
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0003677molecular_functionDNA binding
GO:0003712molecular_functiontranscription cofactor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15914.1.S1_at--1036--5211Chr06:26360245..26360269 (25 bp)
GAATTTCGAGATGATGACCTACTTG
LOC_Os06g43790
OsAffx.15914.1.S1_at--985--5831Chr06:26360230..26360254 (25 bp)
GACCTACTTGATCCTAGGCCATACA
LOC_Os06g43790
OsAffx.15914.1.S1_at--274--9351Chr06:26360177..26360201 (25 bp)
TCGAGCGGCAAAGAGACGTACCCCA
LOC_Os06g43790
OsAffx.15914.1.S1_at--17--1371Chr06:26360164..26360188 (25 bp)
AGACGTACCCCAGCTGATATGACAG
LOC_Os06g43790
OsAffx.15914.1.S1_at--810--671Chr06:26360146..26360170 (25 bp)
ATGACAGAATACACACCACCAGCTA
LOC_Os06g43790
OsAffx.15914.1.S1_at--775--1711Chr06:26360132..26360156 (25 bp)
ACCACCAGCTAAGCGGCACAGAGGA
LOC_Os06g43790
OsAffx.15914.1.S1_at--1151--6151Chr06:26359613..26359636 (24 bp)
GAGGTTGAGCTCTCCAACATATTGG
LOC_Os06g43790
OsAffx.15914.1.S1_at--432--3091Chr06:26359584..26359608 (25 bp)
AATAGTTGACCACTTGCGGACAATG
LOC_Os06g43790
OsAffx.15914.1.S1_at--413--3191Chr06:26359564..26359588 (25 bp)
CAATGAGCTGTTCATTCCTTTTCCG
LOC_Os06g43790
OsAffx.15914.1.S1_at--495--6211Chr06:26359520..26359544 (25 bp)
GAGGCTCCTGATTACTTTGACATAA
LOC_Os06g43790
OsAffx.15914.1.S1_at--158--5891Chr06:26359493..26359517 (25 bp)
GAGCGTCCAATGGATCTTGGTACTA
LOC_Os06g43790
Target Sequence 
GAATTTCGAGATGATGACCTACTTGATCCTAGGCCATACAAAAATGACAGAAGGGTACCTGAAAGAGGTCGAGCGGCAAA
GAGACGTACCCCAGCTGATATGACAGAATACACACCACCAGCTAAGCGGCACAGAGGAGGAGAGGTTGAGCTCTCCAACA
TATTGGAAAAAATAGTTGACCACTTGCGGACAATGAGCTGTTCATTCCTTTTCCGTAAACCGGTGACGAAGAAAGAGGCT
CCTGATTACTTTGACATAATTGAGCGTCCAATGGATCTTGGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis