Browse Element(s) Details


Os.12737.1.S1_at

Description gb:AK068674.1
DB_XREF= gi:32978691
TID=Os.12737.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159P17, full insert sequence.
FL= gb:AK068674.1 gb:AK104339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4380011/11methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43780OsAffx.28089.1.S1_at11/116+26354718..26357951expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_x_at11/116+26354718..26357951expressed protein
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43800Os.12737.1.S1_at11/116+26375117..26378230methyltransferase, putative, expressed
LOC_Os06g43810Os.49529.1.S1_at11/116+26383997..26384661expressed protein
LOC_Os06g43820OsAffx.5095.1.S1_at10/116+26387053..26390622hypothetical protein
LOC_Os06g43830NANA6+26392281..26392499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12737.1.S1_at--149--8271Chr06:26375923..26375947 (25 bp)
GGCAGATATTTCGAGACTCCCTTTT
LOC_Os06g43800
Os.12737.1.S1_at--772--9291Chr06:26375679..26375868 (25 bp)
TCCCCTTCGAATGCGGTGGCTGAAA
LOC_Os06g43800
Os.12737.1.S1_at--814--5571Chr06:26375658..26375682 (25 bp)
GAAATAAGTCGAGTCCTGAGGCCTG
LOC_Os06g43800
Os.12737.1.S1_at--293--8751Chr06:26375623..26375647 (25 bp)
TGTAGCAACAACCTTCTTATCTTCT
LOC_Os06g43800
Os.12737.1.S1_at--897--2451Chr06:26375592..26375616 (25 bp)
AACAATCCCTTCTCTGTTGAAGCGT
LOC_Os06g43800
Os.12737.1.S1_at--544--1711Chr06:26375449..26375473 (25 bp)
ACCAGCTACAATTACTTCACCGAAG
LOC_Os06g43800
Os.12737.1.S1_at--376--5131Chr06:26375406..26375430 (25 bp)
GCAAATCCTGCGGTCTTGTTAATTA
LOC_Os06g43800
Os.12737.1.S1_at--790--2891Chr06:26375374..26375398 (25 bp)
AAGGTCCAGAGGTCGTTCATCATGT
LOC_Os06g43800
Os.12737.1.S1_at--977--10371Chr06:26375350..26375374 (25 bp)
TTTTCTGGGCAGAAGCCGTAGCCTA
LOC_Os06g43800
Os.12737.1.S1_at--88--7051Chr06:26375268..26375292 (25 bp)
GTAAAATGCCATTCACCGATACCTG
LOC_Os06g43800
Os.12737.1.S1_at--372--5211Chr06:26375211..26375235 (25 bp)
GAATTCCTCTCCCTGTTATGAAGAT
LOC_Os06g43800
Target Sequence 
GGCAGATATTTCGAGACTCCCTTTTGCTTCATCTTCAATTGATGCCATTCATGCTGGAGCTGCTATCCACTGCTGGCCCT
CCCCTTCGAATGCGGTGGCTGAAATAAGTCGAGTCCTGAGGCCTGGTGGTGTCTTTGTAGCAACAACCTTCTTATCTTCT
CCCAGGAACAATCCCTTCTCTGTTGAAGCGTTGCGGCCACTGAGACAGATTGTTGGACCAGTTAACACCAGCTACAATTA
CTTCACCGAAGGAGAGCTCGAAGACTTGTGCAAATCCTGCGGTCTTGTTAATTACAGCAGCAAGGTCCAGAGGTCGTTCA
TCATGTTTTCTGGGCAGAAGCCGTAGCCTAAAATTACATCAAAACCTTTGTAGCCAAAGTATAGCTGTCAATTCTACAAA
AGTCTTTGTAAAATGCCATTCACCGATACCTGCATAGATTAGACCCAGCAGAAGTTTTTGCTTGGAATTCCTCTCCCTGT
TATGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis