Browse Element(s) Details


OsAffx.28089.1.S1_at

Description tigr:9634.m04231
TID=OsAffx.28089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4378011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed
LOC_Os06g43770Os.56085.1.S1_at11/116+26345139..26346101expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_at11/116+26354718..26357951expressed protein
LOC_Os06g43780OsAffx.28089.1.S1_x_at11/116+26354718..26357951expressed protein
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43800Os.12737.1.S1_at11/116+26375117..26378230methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28089.1.S1_at--198--9671Chr06:26355064..26355088 (25 bp)
TCACGCCGACGATGTACGACCAGAT
LOC_Os06g43780
OsAffx.28089.1.S1_at--1096--4151Chr06:26355061..26355085 (25 bp)
CGCCGACGATGTACGACCAGATGGT
LOC_Os06g43780
OsAffx.28089.1.S1_at--449--6271Chr06:26355054..26355078 (25 bp)
GATGTACGACCAGATGGTCGCCGCC
LOC_Os06g43780
OsAffx.28089.1.S1_at--114--1651Chr06:26355020..26355044 (25 bp)
AGCGCCGGGCTGACCCAGTACGGCC
LOC_Os06g43780
OsAffx.28089.1.S1_at--41--1991Chr06:26354974..26354998 (25 bp)
ACTGCTCGTACGTGCGGCGCGCGTT
LOC_Os06g43780
OsAffx.28089.1.S1_at--668--7551Chr06:26354852..26354876 (25 bp)
GTGGCCGCGTGGGTGGCGCACTCAC
LOC_Os06g43780
OsAffx.28089.1.S1_at--917--7471Chr06:26354844..26354868 (25 bp)
GTGGGTGGCGCACTCACAGGAGCGG
LOC_Os06g43780
OsAffx.28089.1.S1_at--350--8351Chr06:26354815..26354839 (25 bp)
GGCGGAGCGAGACGAGGCGGTTCCA
LOC_Os06g43780
OsAffx.28089.1.S1_at--410--891Chr06:26354801..26354825 (25 bp)
AGGCGGTTCCAGGTGTCGCCGTACA
LOC_Os06g43780
OsAffx.28089.1.S1_at--472--3971Chr06:26354798..26354822 (25 bp)
CGGTTCCAGGTGTCGCCGTACAGGT
LOC_Os06g43780
OsAffx.28089.1.S1_at--249--4151Chr06:26354785..26354809 (25 bp)
CGCCGTACAGGTTCCCCATCGAGGA
LOC_Os06g43780
Target Sequence 
TCACGCCGACGATGTACGACCAGATGGTCGCCGCCGCCAACGCCAGCGCCGGGCTGACCCAGTACGGCCCCGTCCTCGCC
GACCTCGCCGACTGCTCGTACGTGCGGCGCGCGTTCCAGGCGGTGACGGCGGCGCACTGCCCGGGGCTGCGGCGGCACAG
CGGCAGGGTGTACCAGGCGCTGCTCGCCGTGTCCGTCGCCGTGGCGGCCGCCGTGGCCGCGTGGGTGGCGCACTCACAGG
AGCGGCGGCGGCGGAGCGAGACGAGGCGGTTCCAGGTGTCGCCGTACAGGTTCCCCATCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis