Browse Element(s) Details


Os.46091.1.S1_s_at

Description gb:AU173963
DB_XREF= gi:13165166
DB_XREF=AU173963
CLONE=S21584
TID=Os.46091.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46091 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2973011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29660Os.46995.1.S1_x_at1/113+16865537..16868449retrotransposon protein, putative, unclassified
LOC_Os03g29680Os.49170.1.S1_at11/113+16875049..16877259EARLY flowering 4 protein, putative, expressed
LOC_Os03g29690OsAffx.13112.1.S1_at11/113+16879732..16880450hypothetical protein
LOC_Os03g29710OsAffx.16205.1.S1_at2/113+16887490..16890376hypothetical protein
LOC_Os03g29710OsAffx.25292.1.S1_at1/113+16887490..16890376hypothetical protein
LOC_Os03g29730Os.46091.1.S1_s_at11/113+16892625..16895830expressed protein
LOC_Os03g29740OsAffx.3365.1.S1_s_at11/113+16896148..16898314small nuclear ribonucleoprotein G, putative, expressed
LOC_Os03g29750Os.11643.1.S1_at11/113+16903540..16909712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g29760Os.10440.1.S1_a_at11/113+16920185..16925726CCAAT-box transcription factor complex WHAP3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46091.1.S1_s_at--660--8531Chr03:16893640..16893664 (25 bp)
TGGACCTCAAGGGTGTGCAACACAT
LOC_Os03g29730
Os.46091.1.S1_s_at--1094--9011Chr03:16893625..16893649 (25 bp)
TGCAACACATTGTTCTGCTATCCCA
LOC_Os03g29730
Os.46091.1.S1_s_at--66--6931Chr03:16893500..16893524 (25 bp)
GTAGCGGTGGTCTCCAAGCTATTAT
LOC_Os03g29730
Os.46091.1.S1_s_at--780--2871Chr03:16893437..16893461 (25 bp)
AAGTGGTTCTTGCATCTGGGATCCC
LOC_Os03g29730
Os.46091.1.S1_s_at--135--6391Chr03:16893418..16893442 (25 bp)
GATCCCATCCACGATAATCAGGACT
LOC_Os03g29730
Os.46091.1.S1_s_at--1118--951Chr03:16893399..16893423 (25 bp)
AGGACTGGCTCGATGCAAAGCACTC
LOC_Os03g29730
Os.46091.1.S1_s_at--592--9851Chr03:16893047..16893071 (25 bp)
TACAATCTGTGTGGAGGCCCTGGAC
LOC_Os03g29730
Os.46091.1.S1_s_at--867--91Chr03:16893019..16893043 (25 bp)
ATTCCCCAGACAACACTCATTTTTG
LOC_Os03g29730
Os.46091.1.S1_s_at--294--3351Chr03:16892759..16892783 (25 bp)
CACGAAGTCGTGTGGCAACGCAGTT
LOC_Os03g29730
Os.46091.1.S1_s_at--1147--1571Chr03:16892721..16892745 (25 bp)
AGCTCATTTTGGTTGTGGTTCTCTG
LOC_Os03g29730
Os.46091.1.S1_s_at--92--10111Chr03:16892667..16892691 (25 bp)
TATGTACAGACTCACCTCTCAAAAC
LOC_Os03g29730
Target Sequence 
TGGACCTCAAGGGTGTGCAACACATTGTTCTGCTATCCCAGCTCTCTGTCTACAGAGGTAGCGGTGGTCTCCAAGCTATT
ATGAACAGCAAACTGCGGAAACTTGCTGAGAGGGATGAAGAAGTGGTTCTTGCATCTGGGATCCCATCCACGATAATCAG
GACTGGCTCGATGCAAAGCACTCCTGGTGGTGATAGAGGTTTCGATTTTACAGAGGGTGNAGCAGCCAAGGGAAGAATGA
GCAAAGAAGATGCTGCTACAATCTGTGTGGAGGCCCTGGACTCCATTCCCCAGACAACACTCATTTTTGAGGTGGCCAAT
GGTGACGAAAAGGTTACTGACTGGAAGGCATGGTTTGCTGAGCGGACGAAAACGGTGACAAGTTAAGTATGATTGAAATG
CAGTAATTTTTTTGTTGGGAAAGAAAGGATTGCGGTATTTCCNCCACGAAGTCGTGTGGCAACGCAGTTGCGCTGAATNT
GAAGCTCATTTTGGTTGTGGTTCTCTGAGTTTGCATTNTGAACTCTGAAATGGTGCTATGTACAGACTCACCTCTCAAAA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46091.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis