Browse Element(s) Details


Os.46177.1.S1_x_at

Description gb:BM038361
DB_XREF= gi:16753982
DB_XREF=U007E09
CLONE=U007E09
TID=Os.46177.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU162014(C62801),C28909(C62801)~unknown protein (P0482D04.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g700608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70030NANA1+40840606..40845440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70040NANA1+40848049..40851294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70050OsAffx.23985.1.S1_at11/111+40853440..40853961Auxin responsive protein
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46177.1.S1_x_at--283--10131Chr01:40868519..40868543 (25 bp)
TATGACAGCAGTACCCTACAACTCT
LOC_Os01g70060
Os.46177.1.S1_x_at--784--10451Chr01:40868495..40868519 (25 bp)
TTACCCAGTATTTCCTCCTATGAAC
LOC_Os01g70060
Os.46177.1.S1_x_at--277--671Chr01:40868476..40868500 (25 bp)
ATGAACTATCCCATGGTCAACATCC
LOC_Os01g70060
Os.46177.1.S1_x_at--316--3211Chr01:40868410..40868434 (25 bp)
CAAGGTTTGGCTGGTCCCTTCTATG
LOC_Os01g70060
Os.46177.1.S1_x_at--29--1191Chr01:40868307..40868331 (25 bp)
AGTACTGCCAGCCAGCTTTGGAGGA
LOC_Os01g70060
Os.46177.1.S1_x_at--1000--7391Chr01:40868247..40868271 (25 bp)
GTGATGATTCATCGCCATGTGTTGT
LOC_Os01g70060
Os.46177.1.S1_x_at--438--5231Chr01:40868214..40868238 (25 bp)
GAATATACTGTTCCTAGTGTTGTAC
LOC_Os01g70060
Os.46177.1.S1_x_at--19--151Chr01:40868144..40868168 (25 bp)
ATTAGTTGTTCAGGTCATGGTCATG
LOC_Os01g70060
Os.46177.1.S1_x_at--806--10471Chr04:21170808..21170827 (20 bp)
TTACTCTTCTTTTTTGCTCTTCCCT
NONE
Os.46177.1.S1_x_at--376--10271NONE
TTTGCTCTTCCCTAGAAAATGTTTG
NONE
Os.46177.1.S1_x_at--790--2431NONE
AAAATGTTTGTCACTTTTGCTTGTG
NONE
Target Sequence 
TATGACAGCAGTACCCTACAACTCTTACCCAGTATTTCCTCCTATGAACTATCCCATGGTCAACATCCCACCTCCCTTCC
CTAGTGCTCCAAATACCCCCCCTGGTTTCCAAGGTTTGGCTGGTCCCTTCTATGNCCCTCCTTNCCCCGCACCACCACCG
CCACCGCCACCACCGATGAACAGGAAATAGACTAGTTTCTTGCCTNCAGATTAGTACTGCCAGCCAGCTTTGGAGGATAN
CCATAGACTTNGCTTCACTGAAGAATATGNTCGTGATGATTCATCGCCATGTGTTGTGGAGCTTGGAATATACTGTTCCT
AGTGTTGTACATTAGTCAGNTGGCCAGATAGTAGCGGATTTAACAGTTAATTANCATTAGTTGTTCAGGTCATGGTCATG
AAGCAAAANGNAAACCATGTGTGACNGCTAGAAAGAAATTCTGGAGTTATGAGTTATGACAGCTGAAGNAANNTGCCATA
GCATGACATCTTTTGTTACTCTTCTTTTTTGCTCTTCCCTAGAAAATGTTTGTCACTTTTGCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46177.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis