Browse Element(s) Details


Os.46382.2.S1_x_at

Description gb:AK063145.1
DB_XREF= gi:32973163
TID=Os.46382.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H01, full insert sequence.
FL= gb:AK101909.1 gb:AK063145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3509011/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g354364/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g352302/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g352602/11Rf1 protein, mitochondrial precursor, putative
LOC_Os10g356502/11expressed protein
LOC_Os10g352402/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g356401/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g150001/11Rf1 protein, mitochondrial precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46382.2.S1_x_at--85--1918Chr10:18727650..18727674 (25 bp)
ACGTGTTCGACGAATTGCTCCGGCG
LOC_Os10g35640
Os.46382.2.S1_x_at--469--4513Chr10:18622357..18622381 (25 bp)
GCCGACGAGGTAACTCCCGACTTGT
LOC_Os10g35436
Os.46382.2.S1_x_at--1053--2053Chr10:18622376..18622400 (25 bp)
ACTTGTGCACCTACGGCATTCTCAT
LOC_Os10g35436
Os.46382.2.S1_x_at--782--3597Chr10:18737733..18737757 (25 bp)
CTTGGACCTCGGTTTCGCGGCCTTG
LOC_Os10g35650
Os.46382.2.S1_x_at--594--9451Chr10:18391632..18391656 (25 bp)
TCGGCTGCATACCTCCTGAGATGAA
LOC_Os10g35090
Os.46382.2.S1_x_at--230--1751Chr10:18391597..18391621 (25 bp)
ACCTTTCTTCATAAGCATTTTTGCC
LOC_Os10g35090
Os.46382.2.S1_x_at--808--10673Chr10:18390447..18390471 (25 bp)
TTGCCAACTTCTTTAACCTGAACGC
NONE
Os.46382.2.S1_x_at--528--5453Chr10:18390466..18390486 (21 bp)
GAACGCAAGCACCTGTCTGCAATTA
NONE
Os.46382.2.S1_x_at--1039--1412Chr10:18390547..18390571 (25 bp)
AGAAATGCAGCATGCCACACACCAC
NONE
Os.46382.2.S1_x_at--347--3311Chr10:18391462..18391486 (25 bp)
CACACACCACACAACTTTTATTCAG
LOC_Os10g35090
Os.46382.2.S1_x_at--510--7872Chr10:18624381..18624400 (20 bp)
GGTTTCGATCTGATTATCTTATCTC
NONE
Target Sequence 
ACGTGTTCGACGAATTGCTCCGGCGTGGAAGGGGCGCCTCGATCTACGGCTTGAACCGCTCCCTCGCCGACGTCGCGCGT
GGCAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCGACTTGTGCAC
CTACGGCATTCTCATCGGTTGCTGCTGCCGCGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCATTAAGA
AGGGATTTAGAGTGGAAGCCATCACCTTCACACCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATG
GACATAGTGCTCCGCAGAATGACCGAGCTCGGCTGCATACCTCCTGAGATGAAACAACAATTAACCTTTCTTCATAAGCA
TTTTTGCCAACTTCTTTAACCTGAACGCAAGCACCTGTCTGCAATTAAAATATTGGATGCAGGTTCAAATTGAATGAACA
GGTTTTATAAAATTTAGAAGCGCAGAAATGCAGCATGCCACACACCACACAACTTTTATTCAGGAACAAGATTGGATTGT
ATAAAATGGTTTCGATCTGATTATCTTATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46382.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis