Browse Element(s) Details


Os.46382.2.S2_x_at

Description gb:AK101909.1
DB_XREF= gi:32987118
TID=Os.46382.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071F06, full insert sequence.
FL= gb:AK101909.1 gb:AK063145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3509011/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g352207/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein
LOC_Os10g35110Os.7805.1.S1_a_at11/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35110OsAffx.6874.1.S1_at1/1110+18403684..18411717Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46382.2.S2_x_at--148--2332Chr10:18488516..18488542 (25 bp)
AAAGTCACCATCTGCTTCATACGAC
LOC_Os10g35220
Os.46382.2.S2_x_at--911--1353Chr10:18488573..18488597 (25 bp)
AGAGAACTGCCCTCATCTATTAGTC
LOC_Os10g35220
Os.46382.2.S2_x_at--4--1153Chr10:18488594..18488618 (25 bp)
AGTCCTGGTGCCGATTATATGTCCC
LOC_Os10g35220
Os.46382.2.S2_x_at--253--4153Chr10:18488618..18488642 (25 bp)
CGCCGTTCTTATCTTGACCAAGTAC
LOC_Os10g35220
Os.46382.2.S2_x_at--696--7033Chr10:18488667..18488691 (25 bp)
GTACACTACAATTAGGCCTCTCGAG
LOC_Os10g35220
Os.46382.2.S2_x_at--1118--2753Chr10:18628622..18628646 (25 bp)
AAGACTGTCAGGTCTCACTGGGTAT
NONE
Os.46382.2.S2_x_at--798--8631Chr10:18388699..18388721 (23 bp)
TGGGTATCCAGGTGGCTCTGTCGAA
LOC_Os10g35090
Os.46382.2.S2_x_at--284--491Chr10:18388655..18388679 (25 bp)
ATCTGGAGTCTGTGACTGTCTGTCA
LOC_Os10g35090
Os.46382.2.S2_x_at--327--7453Chr10:18628793..18628817 (25 bp)
GTGTCAATCTAGCTGAGATCCGTCT
NONE
Os.46382.2.S2_x_at--250--6372Chr10:18628809..18628929 (25 bp)
GATCCGTCTGGTATAGCGTATGCGA
NONE
Os.46382.2.S2_x_at--261--871Chr10:18388540..18388564 (25 bp)
ATGGCCACCAATAGTTTTCCTCATG
LOC_Os10g35090
Target Sequence 
AAAGTCACCATCTGCTTCATACGACAGATATGCAGCAACTACTCGCTTGCCTAGTAGAGAACTGCCCTCATCTATTAGTC
CTGGTGCCGATTATATGTCCCGCCGTTCTTATCTTGACCAAGTACCTACTGATAGGTACTCTAGTAGGGTACACTACAAT
TAGGCCTCTCGAGAGCTGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTAT
ACTGAGGCTGCGGAGCAGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTCTCACTGGGTATCCAGGTGGCTCTGT
CGAATTGCGGATTCCAAATAGTTATCTGGAGTCTGTGACTGTCTGTCATTGGTGTTGGTGGTGTCAATCTAGCTGAGATC
CGTCTGGTATAGCGTATGCGAAACATCATGCACTATCCCCAGTCTTAACCATGCCCCAATGGCCACCAATAGTTTTCCTC
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46382.2.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis