Browse Element(s) Details


Os.46404.1.S1_x_at

Description gb:AU165140
DB_XREF= gi:11414347
DB_XREF=AU165140
CLONE=Osjc25
TID=Os.46404.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative photosystem q(b) protein (OSJNBa0001O14.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2120011/11Photosystem Q, putative, expressed
LOC_Os08g3542011/11Photosystem Q, putative, expressed
LOC_Os04g1677011/11Photosystem Q, putative, expressed
LOC_Os10g398807/11Photosystem Q, putative
LOC_Os04g167305/11Photosystem Q, putative
LOC_Os05g017001/11peroxisomal ABC transporter PXA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21170OsAffx.18326.1.S1_at11/1110+10452302..10452694hypothetical protein
LOC_Os10g21180OsAffx.30472.1.S1_at11/1110+10455384..10455695hypothetical protein
LOC_Os10g21190NANA10+10457616..10459725hypothetical protein
LOC_Os10g21200Os.46404.1.S1_x_at11/1110+10475878..10476987Photosystem Q, putative, expressed
LOC_Os10g21210OsAffx.30473.1.S1_x_at11/1110+10484741..10485706Photosystem II D2 protein, putative
LOC_Os10g21220OsAffx.32194.1.S1_x_at11/1110+10495502..10504226DNA-directed RNA polymerase beta chain, putative
LOC_Os10g21220OsAffx.26050.8.S1_x_at11/1110+10495502..10504226DNA-directed RNA polymerase beta chain, putative
LOC_Os10g21220Os.26535.1.S1_x_at10/1110+10495502..10504226DNA-directed RNA polymerase beta chain, putative

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0009781biological_processphotosynthetic water oxidation
GO:0015916biological_processfatty acyl coenzyme A transport
GO:0005777cellular_componentperoxisome
GO:0009523cellular_componentphotosystem II
GO:0016168molecular_functionchlorophyll binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
GO:0045157molecular_functionelectron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46404.1.S1_x_at--33--6975Chr10:21005569..21005593 (25 bp)
GTAGCTGGTGTATTCGGCGGTTCCC
LOC_Os10g39880
Os.46404.1.S1_x_at--99--7336Chr12:11409938..11409962 (25 bp)
GTGCTATGCATGGTTCCTTGGTAAC
NONE
Os.46404.1.S1_x_at--338--10238Chr12:11410044..11410068 (25 bp)
TATTGTGGCCGCTCATGGTTATTTT
NONE
Os.46404.1.S1_x_at--1152--8419Chr12:11410069..11410093 (25 bp)
GGCCGATTAATCTTCCAATATGCTA
NONE
Os.46404.1.S1_x_at--942--9816Chr12:11410098..11410122 (25 bp)
TAACAACTCTCGTTCTTTACACTTC
NONE
Os.46404.1.S1_x_at--868--7656Chr12:11410147..11410171 (25 bp)
GGGATTTGGTTCACTGCTTTAGGTA
NONE
Os.46404.1.S1_x_at--129--6997Chr12:11410175..11410199 (25 bp)
GTACTATGGCTTTCAATCTAAACGG
NONE
Os.46404.1.S1_x_at--594--10056Chr12:11410220..11410244 (25 bp)
TAGTTGATAGCCAAGGTCGCGTTAT
NONE
Os.46404.1.S1_x_at--807--7234Chr12:11410235..11410259 (25 bp)
GTCGCGTTATTAATACTTGGGCTGA
NONE
Os.46404.1.S1_x_at--1055--7575Chr10:21005905..21005929 (25 bp)
GGGCTGATATCATCAACCGTGCTAA
LOC_Os10g39880
Os.46404.1.S1_x_at--93--1376Chr12:11410326..11410350 (25 bp)
AGACCTAGCTGCTCTTGAAGTTCCA
NONE
Target Sequence 
GTAGCTGGTGTATTCGGCGGTTCCCTATTNAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC
TGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGANACTTATANTATTGTGGCCGCTCATGGTTATT
TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTA
GGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGA
TAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTA
ATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46404.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis