Browse Element(s) Details


Os.46435.1.S1_s_at

Description gb:BE040077
DB_XREF= gi:8335093
DB_XREF=OD104A04
TID=Os.46435.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46435 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51437 (A.thaliana) T51437 hypothetical protein F2G14_40 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3911011/11Gibberellin regulated protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39060OsAffx.26382.1.S1_at11/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39060Os.54692.1.S1_at1/114+22993048..22998986CRS1/YhbY domain containing protein, expressed
LOC_Os04g39070OsAffx.4024.1.S1_at11/114+23000985..23002817F-box domain containing protein
LOC_Os04g39080Os.10790.1.A1_at11/114+23007093..23009134F-box domain containing protein, expressed
LOC_Os04g39090Os.17975.1.S1_x_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39090Os.17975.2.S1_at11/114+23009840..23015834SAM domain family protein, expressed
LOC_Os04g39100OsAffx.26383.1.S1_at11/114+23016909..23018081Peroxidase 65 precursor, putative, expressed
LOC_Os04g39110Os.46435.1.S1_s_at11/114+23023196..23024086Gibberellin regulated protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009826biological_processunidimensional cell growth
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46435.1.S1_s_at--874--2211Chr04:23023750..23023773 (24 bp)
ACAAGATCGTAGACCCCGGCAAAGA
LOC_Os04g39110
Os.46435.1.S1_s_at--562--6951Chr04:23023635..23023765 (25 bp)
GTAGACCCCGGCAAAGACTGCGTGG
LOC_Os04g39110
Os.46435.1.S1_s_at--713--1631Chr04:23023590..23023614 (25 bp)
AGCGAGCACTCGCACAAGAAGCGGT
LOC_Os04g39110
Os.46435.1.S1_s_at--1086--1371Chr04:23023496..23023520 (25 bp)
AGACCTGCGGCAGGTGCTACACCGA
LOC_Os04g39110
Os.46435.1.S1_s_at--952--5731Chr04:23023473..23023497 (25 bp)
GACTGGGTCTCGCACAACAACATGA
LOC_Os04g39110
Os.46435.1.S1_s_at--1156--2451Chr04:23023458..23023482 (25 bp)
AACAACATGACCAAGTGCCCGTGAG
LOC_Os04g39110
Os.46435.1.S1_s_at--584--5911Chr04:23023436..23023460 (25 bp)
GAGCTAAGCGCGCACGAATACGATC
LOC_Os04g39110
Os.46435.1.S1_s_at--1158--291Chr04:23023419..23023443 (25 bp)
ATACGATCCGTCTGCCTGCCTAGAT
LOC_Os04g39110
Os.46435.1.S1_s_at--414--4451Chr04:23023402..23023426 (25 bp)
GCCTAGATCTAGCTTAATTTAGCTT
LOC_Os04g39110
Os.46435.1.S1_s_at--775--3851Chr04:23023334..23023358 (25 bp)
CTGTCTTTCCAGAGTTATCCTTTTT
LOC_Os04g39110
Os.46435.1.S1_s_at--1084--9451Chr04:23023246..23023270 (25 bp)
TCTGGACCTCTAGTATGTTTTGTTG
LOC_Os04g39110
Target Sequence 
ACAAGATCGTAGACCCCGGCAAAGACTGCGTGGGGGCGTGCGACGCGCGGTGCAGCGAGCACTCGCACAAGAAGCGGTGC
AGCCGNTCCTGCCTCACGTGCTGCAGCGCGTGCCGCTGCGTCCCGGCGGGCACGGCCGGCAACCGGGAGACCTGCGGCAG
GTGCTACACCGACTGGGTCTCGCACAACAACATGACCAAGTGCCCGTGAGCTAAGCGCGCACGAATACGATCCGTCTGCC
TGCCTAGATCTAGCTTAATTTAGCTTTGCATTGCTCCTAGTTGAGTAGTTGGTGTTGTCCGTTGGGTTTCTGTCTTTCCA
GAGTTATCCTTTTTTCTTTTTCTTTTTTTTTNCTTCCTGAGAGAAGAGAGGGTGTTGACGAGCTGTTACTGTTAGTANTC
TGGACCTCTAGTATGTTTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46435.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis