Browse Element(s) Details


Os.46436.1.S1_at

Description gb:NM_195547.1
DB_XREF= gi:37532453
TID=Os.46436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46436 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative aminotransferase (OSJNAa0082N11.15), mRNA.
PROD=putative aminotransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1524010/11hypothetical protein
LOC_Os05g182802/11Kelch motif family protein
LOC_Os12g224002/11hypothetical protein
LOC_Os08g105101/11aminotransferase, class III family protein, expressed
LOC_Os05g202801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15180NANA10+7718976..7721846retrotransposon protein, putative, unclassified
LOC_Os10g15190NANA10+7722733..7723759hypothetical protein
LOC_Os10g15200NANA10+7727030..7727641retrotransposon, putative, centromere-specific
LOC_Os10g15210NANA10+7729358..7734672retrotransposon protein, putative, unclassified
LOC_Os10g15220OsAffx.30421.1.S1_s_at11/1110+7736492..7738270hypothetical protein
LOC_Os10g15230OsAffx.30422.1.S1_x_at11/1110+7741882..7743419hypothetical protein
LOC_Os10g15230OsAffx.30422.2.S1_x_at1/1110+7741882..7743419hypothetical protein
LOC_Os10g15240Os.46436.1.S1_at10/1110+7745906..7749861hypothetical protein
LOC_Os10g15250OsAffx.16111.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.19776.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.22699.1.S1_x_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15260OsAffx.8332.1.S1_at10/1110+7761095..7762097hypothetical protein
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46436.1.S1_at--560--2072Chr10:7747666..7747999 (25 bp)
ACATACTTTGAGAAGGTCAGCCCAT
LOC_Os10g15240
Os.46436.1.S1_at--27--2912Chr10:7747988..7748011 (24 bp)
AAGGTCAGCCCATACACTATTCTGG
LOC_Os10g15240
Os.46436.1.S1_at--542--4312Chr10:7747996..7748319 (25 bp)
CCATACACTATTCTGGGCATAGGTA
LOC_Os10g15240
Os.46436.1.S1_at--566--10211NONE
TATTCTGGGCATAGGTAAGTGTGAA
NONE
Os.46436.1.S1_at--408--9211Chr10:7749391..7749415 (25 bp)
TCCAAGCTCTAATCTCGGATGATTC
LOC_Os10g15240
Os.46436.1.S1_at--81--3051Chr10:7749401..7749425 (25 bp)
AATCTCGGATGATTCGGCGAACACC
LOC_Os10g15240
Os.46436.1.S1_at--542--7991Chr10:7749407..7749431 (25 bp)
GGATGATTCGGCGAACACCATCTCT
LOC_Os10g15240
Os.46436.1.S1_at--613--4333Chr12:12648794..12648977 (25 bp)
CCATCTCTCCAGCTTCTAACATAGA
LOC_Os12g22400
Os.46436.1.S1_at--561--3772Chr12:12648798..12648981 (25 bp)
CTCTCCAGCTTCTAACATAGATCGG
LOC_Os12g22400
Os.46436.1.S1_at--644--271Chr10:7749604..7749628 (25 bp)
ATAGATCGGCTGGAGGCCCGCAAAA
LOC_Os10g15240
Os.46436.1.S1_at--65--1291Chr10:7749606..7749630 (25 bp)
AGATCGGCTGGAGGCCCGCAAAATT
LOC_Os10g15240
Target Sequence 
ACATACTTTGAGAAGGTCAGCCCATACACTATTCTGGGCATAGGTAAGTGTGAAGAGGCAGAAGAAGAGACAACAAGCAA
AACTCTAGCACCTCTGAATGAAGATGTCAAGAAAACTCTTGAGGATATATCTCATCGGCTAGAGTCATCATTGGATAACT
TGGTGGCTGACTGTGGCTCAATCCAGGCAAGATTTGCAGAGATCCAAGCTCTAATCTCGGATGATTCGGCGAACACCATC
TCTCCAGCTTCTAACATAGATCGGCTGGAGGCCCGCAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis