Browse Element(s) Details


Os.46444.1.S1_x_at

Description gb:AK120671.1
DB_XREF= gi:37990294
TID=Os.46444.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160F22, full insert sequence.
FL= gb:AK120671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g155901/11hypothetical protein
LOC_Os08g050701/11hypothetical protein
LOC_Os11g148101/11hypothetical protein
LOC_Os04g025301/11expressed protein
LOC_Os11g325601/11hypothetical protein
LOC_Os11g149301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15570Os.49352.1.S1_at11/1111+8820635..8822141expressed protein
LOC_Os11g15580OsAffx.30995.1.S1_at10/1111+8831415..8832011hypothetical protein
LOC_Os11g15590OsAffx.18868.5.S1_x_at10/1111+8833960..8837043hypothetical protein
LOC_Os11g15590Os.46444.1.S1_x_at1/1111+8833960..8837043hypothetical protein
LOC_Os11g15600OsAffx.18869.1.S1_at11/1111+8849548..8850804hypothetical protein
LOC_Os11g15610OsAffx.18870.1.S1_at9/1111+8852109..8853271hypothetical protein
LOC_Os11g15620OsAffx.18871.1.S1_at11/1111+8855011..8857361F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46444.1.S1_x_at--711--371Chr09:3495336..3495360 (25 bp)
ATCAACGCCGGGAGCCGCTGGACGT
NONE
Os.46444.1.S1_x_at--490--6012Chr08:2600373..2600588 (25 bp)
GAGAGTGCGTCGAACACCTGCGTGC
LOC_Os08g05070
Os.46444.1.S1_x_at--926--1751Chr09:3495292..3495316 (25 bp)
ACCTGCGTGCGCTGCCGACGTCGAT
NONE
Os.46444.1.S1_x_at--1095--9211NONE
TCCACCGCACGATTCCGAGGGAGTG
NONE
Os.46444.1.S1_x_at--928--1072Chr04:926178..926580 (25 bp)
AGTGGTTGAGTTGACTGCAAAACAA
LOC_Os04g02530
Os.46444.1.S1_x_at--641--2211Chr09:3494174..3494198 (25 bp)
ACAAGGACAGCAAGACAGTGAGCAA
NONE
Os.46444.1.S1_x_at--500--995Chr11:18715693..18715715 (23 bp)
AGGAGGATATGCATGCCCGGGAATC
LOC_Os11g32560
Os.46444.1.S1_x_at--226--9631Chr09:3479950..3479974 (25 bp)
TCAGGACCTCCTTCGACAAATAATA
NONE
Os.46444.1.S1_x_at--857--5831Chr09:3479946..3479970 (25 bp)
GACCTCCTTCGACAAATAATAGCAT
NONE
Os.46444.1.S1_x_at--433--4811Chr09:3479394..3479418 (25 bp)
GCTCGTGTTAATGTAGTGGCTGCTA
NONE
Os.46444.1.S1_x_at--1005--6651Chr09:3479244..3479268 (25 bp)
GTTGCAAACTGAATGCTGGAACTTG
NONE
Target Sequence 
ATCAACGCCGGGAGCCGCTGGACGTCGGGGAGAGTGCGTCGAACACCTGCGTGCGCTGCCGACGTCGATTCGCCCCTGCT
TCACCCGCACCGTGCCGCGCATCACCGACCTATGCCGTTGCTCCACCGCACGATTCCGAGGGAGTGGTTGAGTTGACTGC
AAAACAAGGACAGCAAGACAGTGAGCAAGGAGGATATGCATGCCCGGGAATCCCTCACTTCACCATCAGGACCTCCTTCG
ACAAATAATAGCATTTGGACAAGGAATGAGGTGTCTGAGCTTGGAATTTGATGGCTCGTGTTAATGTAGTGGCTGCTAGG
TGGAATTTTTTGGTGCAAGAACTTGGCACTACCTATAGGAACTTTGTAGTCGGCTGGGACTTGTGTAGTTGGATGGTGGA
TGGATCATTTTGTAATCATGTTTTGTGCTTTTGTATGGAACATGTTGCAAACTGAATGCTGGAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46444.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis