Browse Element(s) Details


Os.46464.1.S1_a_at

Description gb:AK072265.1
DB_XREF= gi:32982288
TID=Os.46464.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0055P24.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006K06, full insert sequence.
FL= gb:AK099202.1 gb:AK072265.1 gb:AK061181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3379011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33780NANA10+17559108..17559722hypothetical protein
LOC_Os10g33790Os.46464.1.S1_a_at11/1110+17576475..17581409DnaJ domain containing protein, expressed
LOC_Os10g33790Os.51693.1.S1_at1/1110+17576475..17581409DnaJ domain containing protein, expressed
LOC_Os10g33800Os.12171.1.S1_at10/1110+17584440..17588381Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os10g33810Os.3387.1.S1_at11/1110+17594205..17596895Myb-related protein Myb4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46464.1.S1_a_at--562--6451Chr10:17577789..17577812 (24 bp)
GATCAATACTTGCTGTATCCCTGGG
LOC_Os10g33790
Os.46464.1.S1_a_at--190--6911Chr10:17577657..17577798 (25 bp)
GTATCCCTGGGCTACACTGGGCTAG
LOC_Os10g33790
Os.46464.1.S1_a_at--225--7591Chr10:17577639..17577663 (25 bp)
GGGCTAGCCAATTTTTCTCAGTTTC
LOC_Os10g33790
Os.46464.1.S1_a_at--878--9511Chr10:17577624..17577648 (25 bp)
TCTCAGTTTCTTGGGCAGTATATTC
LOC_Os10g33790
Os.46464.1.S1_a_at--1101--7591Chr10:17577612..17577636 (25 bp)
GGGCAGTATATTCCATCTGTTGTTT
LOC_Os10g33790
Os.46464.1.S1_a_at--237--4331Chr10:17577600..17577624 (25 bp)
CCATCTGTTGTTTATAACTTCCAGG
LOC_Os10g33790
Os.46464.1.S1_a_at--964--2511Chr10:17576959..17577377 (25 bp)
AACTTCCAGGAATTGATTGTGACTA
LOC_Os10g33790
Os.46464.1.S1_a_at--723--51Chr10:17576948..17576972 (25 bp)
ATTGATTGTGACTACAGCTTCATCT
LOC_Os10g33790
Os.46464.1.S1_a_at--343--4911Chr10:17576932..17576956 (25 bp)
GCTTCATCTGTTTTGCTTTGCATAT
LOC_Os10g33790
Os.46464.1.S1_a_at--1116--9071Chr10:17576919..17576943 (25 bp)
TGCTTTGCATATTGGCGTCGTACTA
LOC_Os10g33790
Os.46464.1.S1_a_at--610--4951Chr10:17576913..17576937 (25 bp)
GCATATTGGCGTCGTACTATCGATA
LOC_Os10g33790
Target Sequence 
GATCAATACTTGCTGTATCCCTGGGCTACACTGGGCTAGCCAATTTTTCTCAGTTTCTTGGGCAGTATATTCCATCTGTT
GTTTATAACTTCCAGGAATTGATTGTGACTACAGCTTCATCTGTTTTGCTTTGCATATTGGCGTCGTACTATCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46464.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis