Browse Element(s) Details


Os.46470.1.S1_at

Description gb:AK058441.1
DB_XREF= gi:32968459
TID=Os.46470.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBa0071I20.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G01, full insert sequence.
FL= gb:AK073585.1 gb:AK058441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0911011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09060NANA10+4668502..4672011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09070NANA10+4672698..4674013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09080NANA10+4677439..4678207hypothetical protein
LOC_Os10g09090Os.46504.1.S1_at11/1110+4680394..4683463Cytochrome P450 family protein, expressed
LOC_Os10g09100OsAffx.18182.1.S1_at11/1110+4685917..4686363Cytochrome P450 76C4, putative
LOC_Os10g09110Os.46470.2.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.2.S1_x_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.1.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09130OsAffx.30352.1.S1_at11/1110+4703327..4705074hypothetical protein
LOC_Os10g09130Os.39421.1.S1_at3/1110+4703327..4705074hypothetical protein
LOC_Os10g09130OsAffx.20967.1.S1_x_at1/1110+4703327..4705074hypothetical protein
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46470.1.S1_at--747--5311Chr10:4695875..4695899 (25 bp)
GAAGGGTGCACGAACTCAAGAGTGT
LOC_Os10g09110
Os.46470.1.S1_at--1118--3731Chr10:4695861..4695885 (25 bp)
CTCAAGAGTGTGATAGGCAGCAAAC
LOC_Os10g09110
Os.46470.1.S1_at--902--631Chr10:4695821..4695845 (25 bp)
ATGATATTACCAAACTGCCCTACCA
LOC_Os10g09110
Os.46470.1.S1_at--1029--9931Chr10:4695793..4695817 (25 bp)
TACGAGGCCGAAGCCACGATAGAAA
LOC_Os10g09110
Os.46470.1.S1_at--987--4391Chr10:4695781..4695805 (25 bp)
GCCACGATAGAAATACAAGGTTACA
LOC_Os10g09110
Os.46470.1.S1_at--636--3191Chr10:4695766..4695790 (25 bp)
CAAGGTTACACCATTCCTAAGGGAG
LOC_Os10g09110
Os.46470.1.S1_at--796--4291Chr10:4695756..4695780 (25 bp)
CCATTCCTAAGGGAGCGAAAGTGCT
LOC_Os10g09110
Os.46470.1.S1_at--573--5531Chr10:4695409..4695433 (25 bp)
GAAACATGTGACTTTTTTATGATGA
LOC_Os10g09110
Os.46470.1.S1_at--535--611Chr10:4695359..4695383 (25 bp)
ATGCGATGATAGCTGCTCTAAATAT
LOC_Os10g09110
Os.46470.1.S1_at--304--4771Chr10:4695348..4695372 (25 bp)
GCTGCTCTAAATATGTAATCACCCA
LOC_Os10g09110
Os.46470.1.S1_at--1013--8731Chr10:4695335..4695359 (25 bp)
TGTAATCACCCAAGATATTTTCTGA
LOC_Os10g09110
Target Sequence 
GAAGGGTGCACGAACTCAAGAGTGTGATAGGCAGCAAACAACAAATGGATGAACATGATATTACCAAACTGCCCTACCAC
CATACGAGGCCGAAGCCACGATAGAAATACAAGGTTACACCATTCCTAAGGGAGCGAAAGTGCTTATAAACTTGTGGGCG
ATCAATCGATGCGCCAACACATGGACCGAGCCAGATNAGTTCATGCCAGAGAGGTTCTACGATAGTGACATTACTTTCAT
GGGGAGGGATTTTCAACTAATTCCTTTTGGAGCTGGAAAGCGCATTTGCCTTGGATTGCCACTAGCTCACAGAATGGTCC
ATTTGATGCTTGGCTCGTTGCTACACCGATTCACATGGACATTGCCAGCTGAGGCTGGGAAAAATGGAGTGGATATGAGG
GNNNAGNGGTTTGGGTTNACACNTATCATTTGNTTGCTCCCCTCTATGTAATAGCTCAAGAAATACAATAAGAAACATGT
GACTTTTTTATGATGAAGAATAGAAGAACATTACAAATGTAATGCGATGATAGCTGCTCTAAATATGTAATCACCCAAGA
TATTTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis