Browse Element(s) Details


Os.46511.2.S1_x_at

Description gb:NM_194620.1
DB_XREF= gi:37530599
TID=Os.46511.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46511 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative o-methyltransferase ZRP4 (OSJNBa0023I19.18), mRNA.
PROD=putative o-methyltransferase ZRP4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0284011/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02850NANA10+1129527..1132563retrotransposon protein, putative, unclassified
LOC_Os10g02860NANA10+1133184..1137423retrotransposon protein, putative, unclassified
LOC_Os10g02870OsAffx.18097.1.S1_at11/1110+1144096..1145803hypothetical protein
LOC_Os10g02880Os.7507.1.S1_at11/1110+1147064..1148630O-methyltransferase family protein, expressed
LOC_Os10g02880Os.46511.1.S1_at1/1110+1147064..1148630O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46511.2.S1_x_at--628--6251Chr10:1125014..1125038 (25 bp)
GATGGTAGCGTGTTCAACACCGCCA
LOC_Os10g02840
Os.46511.2.S1_x_at--649--4171Chr10:1124994..1125018 (25 bp)
CGCCATGGTTGAGGACAGCCGTGTC
LOC_Os10g02840
Os.46511.2.S1_x_at--678--1371Chr10:1124947..1124971 (25 bp)
AGAGCTGTGGCGTTTTCCAGGGCAT
LOC_Os10g02840
Os.46511.2.S1_x_at--1088--391Chr10:1124924..1124948 (25 bp)
ATCAGCTCTCTGGTTGATGTTGGCG
LOC_Os10g02840
Os.46511.2.S1_x_at--691--4091Chr10:1124869..1124893 (25 bp)
CGACGGCATTCCCAAACATCAAGTG
LOC_Os10g02840
Os.46511.2.S1_x_at--1139--3211Chr10:1124850..1124874 (25 bp)
CAAGTGTACGGTTTTGGATCTCCCT
LOC_Os10g02840
Os.46511.2.S1_x_at--995--10391Chr10:1124839..1124863 (25 bp)
TTTTGGATCTCCCTCATATCGTCGC
LOC_Os10g02840
Os.46511.2.S1_x_at--359--3571Chr10:1124798..1124822 (25 bp)
CATAGCAACATCCAGTTCGTCGGTG
LOC_Os10g02840
Os.46511.2.S1_x_at--699--10591Chr10:1124783..1124807 (25 bp)
TTCGTCGGTGGTGACTTTTTCGAGT
LOC_Os10g02840
Os.46511.2.S1_x_at--416--10311Chr10:1124766..1124790 (25 bp)
TTTCGAGTTTATTCCAGCAGCTGAT
LOC_Os10g02840
Os.46511.2.S1_x_at--396--9131Chr10:1124574..1124598 (25 bp)
TGCGGCGGTGCAAAGAGGCAATCCT
LOC_Os10g02840
Target Sequence 
GATGGTAGCGTGTTCAACACCGCCATGGTTGAGGACAGCCGTGTCGCCATGGATATCATCTTGAAGGAGAGCTGTGGCGT
TTTCCAGGGCATCAGCTCTCTGGTTGATGTTGGCGGTGGCCATGGTGCTGCAGCTGCAGCTATAGCGACGGCATTCCCAA
ACATCAAGTGTACGGTTTTGGATCTCCCTCATATCGTCGCCGAGGCTCCCACCACCCATAGCAACATCCAGTTCGTCGGT
GGTGACTTTTTCGAGTTTATTCCAGCAGCTGATGTTGTGCTACTTAAGTATATTTTGCATGCTTGGCAAGATGATGATTG
TGTCAAGATTCTGCGGCGGTGCAAAGAGGCAATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46511.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis