Browse Element(s) Details


Os.46512.1.S1_at

Description gb:AK069597.1
DB_XREF= gi:32979621
TID=Os.46512.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0064P21.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024H07, full insert sequence.
FL= gb:AK069597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3950011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39470OsAffx.1887.1.S1_x_at11/1110+20736620..20745261expressed protein
LOC_Os10g39470Os.7121.1.S1_at11/1110+20736620..20745261expressed protein
LOC_Os10g39480OsAffx.828.1.S1_x_at2/1110+20752790..20753419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g39489NANA10+20756619..20757626expressed protein
LOC_Os10g39500Os.46512.1.S1_at11/1110+20762293..20766904expressed protein
LOC_Os10g39500Os.46512.2.S1_x_at6/1110+20762293..20766904expressed protein
LOC_Os10g39510Os.53336.1.S1_x_at11/1110+20775425..20779239expressed protein
LOC_Os10g39510Os.53336.1.S1_at11/1110+20775425..20779239expressed protein
LOC_Os10g39520Os.2653.1.S1_at11/1110+20779773..20784464MLO-like protein 10, putative, expressed
LOC_Os10g39530NANA10+20788585..20792933retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46512.1.S1_at--1043--1171Chr10:20766378..20766402 (25 bp)
AGTACTCACTCCAACAGCAAATCAG
LOC_Os10g39500
Os.46512.1.S1_at--131--1131Chr10:20766406..20766430 (25 bp)
AGTGCCCACTGCGTGCTGGTAATAG
LOC_Os10g39500
Os.46512.1.S1_at--282--8011Chr10:20766436..20766460 (25 bp)
GGAGGCTGCCCAAGCGACAGTACTG
LOC_Os10g39500
Os.46512.1.S1_at--766--1171Chr10:20766454..20766478 (25 bp)
AGTACTGCGGAACCTGTCTTAGCTT
LOC_Os10g39500
Os.46512.1.S1_at--411--6571Chr10:20766553..20766577 (25 bp)
GATTCGTTCAGTACCATGCATCGGA
LOC_Os10g39500
Os.46512.1.S1_at--1054--1651Chr10:20766593..20766617 (25 bp)
AGCGCCTCTGAGGTTCATATCTTGG
LOC_Os10g39500
Os.46512.1.S1_at--1060--1531Chr10:20766732..20766756 (25 bp)
AGCATGCTGAGTAGGTCTCACCTCA
LOC_Os10g39500
Os.46512.1.S1_at--913--3731Chr10:20766748..20766772 (25 bp)
CTCACCTCAGGTTTGGCTTAATTTC
LOC_Os10g39500
Os.46512.1.S1_at--28--3871Chr10:20766776..20766800 (25 bp)
CTGAGTAGGTCTCCTCTGTTTCAAA
LOC_Os10g39500
Os.46512.1.S1_at--1096--7791Chr10:20766808..20766832 (25 bp)
GGTCGCAGCCTGAAATACTTCTGTT
LOC_Os10g39500
Os.46512.1.S1_at--240--6671Chr10:20766843..20766867 (25 bp)
GTTGCAGTAGAGCTTCAGACAGTCC
LOC_Os10g39500
Target Sequence 
AGTACTCACTCCAACAGCAAATCAGCCAAGTGCCCACTGCGTGCTGGTAATAGGAGGTGGAGGCTGCCCAAGCGACAGTA
CTGCGGAACCTGTCTTAGCTTGCAACATGCAATTCATGATACAAAATAGCTATGGCAAAGGTTTCGGGGAACTGGGAATT
GGTAGAGTACGCGGAGATTCGTTCAGTACCATGCATCGGATCAGTTTGTAGGCTGAGCGCCTCTGAGGTTCATATCTTGG
TGGTGATGTCAATCTGTAATGACTGATGGTTGGTAGATTAGCATACGGTGGTAGTTTTGCAGGATGTAGATTGGTCTAGC
TGAAAACATGGGCTCCTTGGAGGGAGATTGTGACAGCATGCTGAGTAGGTCTCACCTCAGGTTTGGCTTAATTTCATGCT
GAGTAGGTCTCCTCTGTTTCAAAAAAAAAAGGTCGCAGCCTGAAATACTTCTGTTCCATACACTAGTTGCAGTAGAGCTT
CAGACAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis