CREP Browser

Os.46515.2.S1_x_at

Description

gb:NM_197662.1
DB_XREF= gi:37536683
TID=Os.46515.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46515 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative sucrose-phosphate synthase (OSJNBa0015J15.23), mRNA.
PROD=putative sucrose-phosphate synthase
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g42820	9/11	hypothetical protein
LOC_Os11g12810	1/11	sucrose-phosphate synthase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g42790	Os.20757.1.S1_a_at	11/11	6	+	25717155..25721142	Nudix hydrolase 2, putative, expressed
LOC_Os06g42800	Os.49369.1.S1_at	3/11	6	+	25726916..25731891	strubbelig receptor family 8, putative
LOC_Os06g42810	Os.11523.1.S1_at	11/11	6	+	25736421..25740550	UBX domain containing protein, expressed
LOC_Os06g42820	Os.46515.2.S1_x_at	9/11	6	+	25740929..25741670	hypothetical protein
LOC_Os06g42820	Os.46515.2.S1_at	9/11	6	+	25740929..25741670	hypothetical protein
LOC_Os06g42840	Os.15920.1.S1_at	2/11	6	+	25744851..25745141	hypothetical protein
LOC_Os06g42850	Os.52613.1.S1_at	10/11	6	+	25746268..25748947	expressed protein
LOC_Os06g42860	Os.53869.1.S1_at	10/11	6	+	25753899..25756446	ab-hydrolase associated lipase region family protein, expressed
LOC_Os06g42870	NA	NA	6	+	25757593..25758777	transposon protein, putative, Pong sub-class
LOC_Os06g42880	NA	NA	6	+	25762645..25763073	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46515.2.S1_x_at--602--623	1	Chr10:21283625..21283649 (25 bp)	GATGGCGTGCAGGAGGCGGACCTCG	NONE
Os.46515.2.S1_x_at--1092--189	2	Chr06:25741104..25741126 (23 bp)	ACGTCGCCAAGGACACATCCAAGGA	LOC_Os06g42820
Os.46515.2.S1_x_at--24--725	2	Chr06:25741106..25741126 (21 bp)	GTCGCCAAGGACACATCCAAGGAGC	LOC_Os06g42820
Os.46515.2.S1_x_at--140--293	2	Chr06:25741112..25741488 (25 bp)	AAGGACACATCCAAGGAGCGCCTCC	LOC_Os06g42820
Os.46515.2.S1_x_at--59--385	3	Chr06:25741497..25741521 (25 bp)	CTGCACAGGACGGTGATCCTGCCGG	LOC_Os06g42820
Os.46515.2.S1_x_at--964--425	2	Chr06:25741534..25741558 (25 bp)	CCGGCAGCGAAGAGCTCCTCTGCGA	LOC_Os06g42820
Os.46515.2.S1_x_at--340--339	2	Chr06:25741538..25741562 (25 bp)	CAGCGAAGAGCTCCTCTGCGACGAG	LOC_Os06g42820
Os.46515.2.S1_x_at--875--377	2	Chr06:25741551..25741575 (25 bp)	CTCTGCGACGAGGACGGGTTTACCA	LOC_Os06g42820
Os.46515.2.S1_x_at--891--947	2	Chr06:25741552..25741576 (25 bp)	TCTGCGACGAGGACGGGTTTACCAC	LOC_Os06g42820
Os.46515.2.S1_x_at--1020--1045	2	Chr06:25741570..25741594 (25 bp)	TTACCACGGAGGACGTCGTGGCCAT	LOC_Os06g42820
Os.46515.2.S1_x_at--192--969	1	Chr10:21283052..21283076 (25 bp)	TCACCCTCGCTGACGGCCAGGACAT	NONE

Target Sequence

GATGGCGTGCAGGAGGCGGACCTCGCCGTCGACGCCGCCGCCTGCTCCGTGCACTGCCACACCTACGTCGCCAAGGACAC
ATCCAAGGAGCGCCTCCTCCCGGGGCTGCACAGGACGGTGATCCTGCCGGGGATGGTCGCCGCCGGCAGCGAAGAGCTCC
TCTGCGACGAGGACGGGTTTACCACGGAGGACGTCGTGGCCATAGAGTCCCCCAACATCGTCACCCTCGCTGACGGCCAG
GACAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details