Browse Element(s) Details


Os.11523.1.S1_at

Description gb:AK122074.1
DB_XREF= gi:37991720
TID=Os.11523.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118C24, full insert sequence.
FL= gb:AK122074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4281011/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42770Os.53688.1.S1_at11/116+25710871..25713681Type II intron maturase family protein, expressed
LOC_Os06g42780OsAffx.28069.1.S1_at11/116+25714154..25714941hypothetical protein
LOC_Os06g42790Os.20757.1.S1_a_at11/116+25717155..25721142Nudix hydrolase 2, putative, expressed
LOC_Os06g42800Os.49369.1.S1_at3/116+25726916..25731891strubbelig receptor family 8, putative
LOC_Os06g42810Os.11523.1.S1_at11/116+25736421..25740550UBX domain containing protein, expressed
LOC_Os06g42820Os.46515.2.S1_x_at9/116+25740929..25741670hypothetical protein
LOC_Os06g42820Os.46515.2.S1_at9/116+25740929..25741670hypothetical protein
LOC_Os06g42840Os.15920.1.S1_at2/116+25744851..25745141hypothetical protein
LOC_Os06g42850Os.52613.1.S1_at10/116+25746268..25748947expressed protein
LOC_Os06g42860Os.53869.1.S1_at10/116+25753899..25756446ab-hydrolase associated lipase region family protein, expressed
LOC_Os06g42870NANA6+25757593..25758777transposon protein, putative, Pong sub-class
LOC_Os06g42880NANA6+25762645..25763073retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11523.1.S1_at--889--5791Chr06:25736972..25736996 (25 bp)
GACGCCTTCTGATAATAACTCCACA
LOC_Os06g42810
Os.11523.1.S1_at--740--8551Chr06:25736874..25736898 (25 bp)
TGGATGATTCTTTGCCATCGACCTC
LOC_Os06g42810
Os.11523.1.S1_at--711--3771Chr06:25736852..25736876 (25 bp)
CTCTCTGCAGATCAGGTTCGTGGAC
LOC_Os06g42810
Os.11523.1.S1_at--109--5011Chr06:25736820..25736844 (25 bp)
GCATGGTCGCGCATTTCAACACGAG
LOC_Os06g42810
Os.11523.1.S1_at--21--9131Chr06:25736778..25736802 (25 bp)
TGCGGGCGTTCATCGACACAACAAG
LOC_Os06g42810
Os.11523.1.S1_at--1076--5411Chr06:25736746..25736770 (25 bp)
GAAGCCGGTGATTACACGCTCCAGG
LOC_Os06g42810
Os.11523.1.S1_at--1120--7231Chr06:25736665..25736689 (25 bp)
GTCGCCAACTCGGTAATCATTCAGA
LOC_Os06g42810
Os.11523.1.S1_at--354--8991Chr06:25736573..25736597 (25 bp)
TGAAGCGTGCAAATTTCCTCCCCTA
LOC_Os06g42810
Os.11523.1.S1_at--297--10311Chr06:25736526..25736550 (25 bp)
TTTCTCTTGAATCTACCCTTTTCTG
LOC_Os06g42810
Os.11523.1.S1_at--978--851Chr06:25736495..25736519 (25 bp)
ATGGCTTCGACCAATAGCTGCTCCA
LOC_Os06g42810
Os.11523.1.S1_at--1084--6891Chr06:25736439..25736463 (25 bp)
GTATCTCGTCCTTATTCATCTATAG
LOC_Os06g42810
Target Sequence 
GACGCCTTCTGATAATAACTCCACACCTCCGGAGGCTACTTNTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCA
AGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTC
GCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGNCCAGGAGAAGCCGGTGATT
ACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCG
GTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCCTCTCTTCAACAAAGCACACTATCCCATN
TGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCAT
GGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis