Browse Element(s) Details


Os.53688.1.S1_at

Description gb:AK073917.1
DB_XREF= gi:32983940
TID=Os.53688.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074L10, full insert sequence.
FL= gb:AK073917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4277011/11Type II intron maturase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42710OsAffx.2625.1.S1_at6/116+25683526..25687067transposon protein, putative, Mutator sub-class
LOC_Os06g42720Os.9832.1.S1_at11/116+25689382..25692908amino acid transporter family protein, putative, expressed
LOC_Os06g42730OsAffx.28068.1.S1_at11/116+25697744..25701600expressed protein
LOC_Os06g42730OsAffx.28068.1.S1_x_at11/116+25697744..25701600expressed protein
LOC_Os06g42730Os.23051.1.A1_at5/116+25697744..25701600expressed protein
LOC_Os06g42740OsAffx.15899.1.S1_at11/116+25703044..25704021hypothetical protein
LOC_Os06g42754Os.53625.1.S1_at11/116+25707680..25709722expressed protein
LOC_Os06g42770Os.53688.1.S1_at11/116+25710871..25713681Type II intron maturase family protein, expressed
LOC_Os06g42780OsAffx.28069.1.S1_at11/116+25714154..25714941hypothetical protein
LOC_Os06g42790Os.20757.1.S1_a_at11/116+25717155..25721142Nudix hydrolase 2, putative, expressed
LOC_Os06g42800Os.49369.1.S1_at3/116+25726916..25731891strubbelig receptor family 8, putative
LOC_Os06g42810Os.11523.1.S1_at11/116+25736421..25740550UBX domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0008380biological_processRNA splicing
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53688.1.S1_at--226--8591Chr06:25711245..25711269 (25 bp)
TGGTATTCCAATGGCCGAGGACTTT
LOC_Os06g42770
Os.53688.1.S1_at--753--3051Chr06:25711198..25711222 (25 bp)
AATCTAGTTCGTCGGTTTGCACTGA
LOC_Os06g42770
Os.53688.1.S1_at--699--6931Chr06:25711147..25711171 (25 bp)
GTAGTGGATTGTTTGTGCTCACCCT
LOC_Os06g42770
Os.53688.1.S1_at--919--7311Chr06:25711133..25711157 (25 bp)
GTGCTCACCCTCTCAAGAGTTAGAG
LOC_Os06g42770
Os.53688.1.S1_at--1003--1331Chr06:25711118..25711142 (25 bp)
AGAGTTAGAGTTCCTTCTCGGCAAT
LOC_Os06g42770
Os.53688.1.S1_at--469--9211Chr06:25711073..25711097 (25 bp)
TGCCAATCTGCATCGCTGAGTATGT
LOC_Os06g42770
Os.53688.1.S1_at--849--5991Chr06:25711031..25711055 (25 bp)
GAGAGACAGCGGTTTCCAGGATTTA
LOC_Os06g42770
Os.53688.1.S1_at--971--8131Chr06:25711006..25711030 (25 bp)
GGACAGGTTTCTCATCATCAATTCA
LOC_Os06g42770
Os.53688.1.S1_at--516--9811Chr06:25710966..25710990 (25 bp)
TAGACGGGTTGGGTTGTGCACTCAA
LOC_Os06g42770
Os.53688.1.S1_at--94--10431Chr06:25710929..25710953 (25 bp)
TTATATCTAGGACACATCTCCCTTC
LOC_Os06g42770
Os.53688.1.S1_at--111--9511Chr06:25710913..25710937 (25 bp)
TCTCCCTTCAGTCAGTTGATTTTGG
LOC_Os06g42770
Target Sequence 
TGGTATTCCAATGGCCGAGGACTTTGAGGCAATAATGGCACCTTTAGAATCTAGTTCGTCGGTTTGCACTGATGAAGCTC
TGATGTATGGCATTTCTAGTAGTGGATTGTTTGTGCTCACCCTCTCAAGAGTTAGAGTTCCTTCTCGGCAATTTGACTGT
TTTGTCATGGGATGCCAATCTGCATCGCTGAGTATGTATGTTCTTCATGTCAAAGAGAGACAGCGGTTTCCAGGATTTAG
GACAGGTTTCTCATCATCAATTCATGGCAGTTTGGATGGTAGACGGGTTGGGTTGTGCACTCAACATGTTAAGGATTTAT
ATCTAGGACACATCTCCCTTCAGTCAGTTGATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis