Browse Element(s) Details


Os.20757.1.S1_a_at

Description gb:AK070867.1
DB_XREF= gi:32980890
TID=Os.20757.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074C15, full insert sequence.
FL= gb:AK070867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4279011/11Nudix hydrolase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42720Os.9832.1.S1_at11/116+25689382..25692908amino acid transporter family protein, putative, expressed
LOC_Os06g42730OsAffx.28068.1.S1_at11/116+25697744..25701600expressed protein
LOC_Os06g42730OsAffx.28068.1.S1_x_at11/116+25697744..25701600expressed protein
LOC_Os06g42730Os.23051.1.A1_at5/116+25697744..25701600expressed protein
LOC_Os06g42740OsAffx.15899.1.S1_at11/116+25703044..25704021hypothetical protein
LOC_Os06g42754Os.53625.1.S1_at11/116+25707680..25709722expressed protein
LOC_Os06g42770Os.53688.1.S1_at11/116+25710871..25713681Type II intron maturase family protein, expressed
LOC_Os06g42780OsAffx.28069.1.S1_at11/116+25714154..25714941hypothetical protein
LOC_Os06g42790Os.20757.1.S1_a_at11/116+25717155..25721142Nudix hydrolase 2, putative, expressed
LOC_Os06g42800Os.49369.1.S1_at3/116+25726916..25731891strubbelig receptor family 8, putative
LOC_Os06g42810Os.11523.1.S1_at11/116+25736421..25740550UBX domain containing protein, expressed
LOC_Os06g42820Os.46515.2.S1_x_at9/116+25740929..25741670hypothetical protein
LOC_Os06g42820Os.46515.2.S1_at9/116+25740929..25741670hypothetical protein
LOC_Os06g42840Os.15920.1.S1_at2/116+25744851..25745141hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
GO:0047631molecular_functionADP-ribose diphosphatase activity
GO:0051287molecular_functionNAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20757.1.S1_a_at--838--9631Chr06:25717819..25717842 (24 bp)
TCAGGCAGAGCCACAAAGCTTTTTT
LOC_Os06g42790
Os.20757.1.S1_a_at--941--2071Chr06:25717519..25717543 (25 bp)
ACATTCTTGAAGTGGGTTTGGCGAA
LOC_Os06g42790
Os.20757.1.S1_a_at--793--951Chr06:25717486..25717510 (25 bp)
AGGACTATGCAGGATTTTCGCCAAT
LOC_Os06g42790
Os.20757.1.S1_a_at--66--7631Chr06:25717408..25717432 (25 bp)
GGGACCTGGACAAGGCCTCAGAATC
LOC_Os06g42790
Os.20757.1.S1_a_at--796--2951Chr06:25717397..25717421 (25 bp)
AAGGCCTCAGAATCCAGTAGTACAC
LOC_Os06g42790
Os.20757.1.S1_a_at--973--2371Chr06:25717340..25717364 (25 bp)
AAACTGTAGCTTTCATACTGGATCT
LOC_Os06g42790
Os.20757.1.S1_a_at--150--391Chr06:25717307..25717331 (25 bp)
ATCACTGGTAGCTTCTACACCTGAT
LOC_Os06g42790
Os.20757.1.S1_a_at--337--1551Chr06:25717298..25717322 (25 bp)
AGCTTCTACACCTGATTTTGACCGA
LOC_Os06g42790
Os.20757.1.S1_a_at--557--151Chr06:25717284..25717308 (25 bp)
ATTTTGACCGAATGTTGCCGCTCCA
LOC_Os06g42790
Os.20757.1.S1_a_at--397--4791Chr06:25717265..25717289 (25 bp)
GCTCCACCAGTCCTGTAATTCAGAA
LOC_Os06g42790
Os.20757.1.S1_a_at--710--2311Chr06:25717240..25717264 (25 bp)
AAAGGAGCAGCAGTTCAGAAATACA
LOC_Os06g42790
Target Sequence 
TCAGGCAGAGCCACAAAGCTTTTTTTGATAAATCGGATCTGTTTTTTGTTTGCATATTACGGCCACTTTCCTTTGATATT
ACCAAGCAAGATTCAGAAATCGAGGCAGCTCAGTGGATGCCTGTGGAGGAATTTGCTGCTCAACCATTTGTCCAGAAACN
NTGAGCTAGTGAAGTACATTCTTGAAGTGGGTTTGGCGAAGGTTGACAAGGACTATGCAGGATTTTCGCCAATCNTCATA
AAATCCGCATTCACGGACAAAAAATCGTTCTTTTACATGAACAGGAGGGACCTGGACAAGGCCTCAGAATCCAGTAGTAC
ACAGAAAAAGACTGAAAAACCTTTGTTCATGGAAAAACTGTAGCTTTCATACTGGATCTTTTTTTCCATCACTGGTAGCT
TCTACACCTGATTTTGACCGAATGTTGCCGCTCCACCAGTCCTGTAATTCAGAAAAAGGAGCAGCAGTTCAGAAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20757.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis