Browse Element(s) Details


OsAffx.28068.1.S1_at

Description tigr:9634.m04124
TID=OsAffx.28068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42690NANA6+25675969..25676493bZIP transcription factor family protein, expressed
LOC_Os06g42700OsAffx.15898.1.S1_s_at11/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42700Os.15524.1.S1_at10/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42710OsAffx.2625.1.S1_at6/116+25683526..25687067transposon protein, putative, Mutator sub-class
LOC_Os06g42720Os.9832.1.S1_at11/116+25689382..25692908amino acid transporter family protein, putative, expressed
LOC_Os06g42730OsAffx.28068.1.S1_at11/116+25697744..25701600expressed protein
LOC_Os06g42730OsAffx.28068.1.S1_x_at11/116+25697744..25701600expressed protein
LOC_Os06g42730Os.23051.1.A1_at5/116+25697744..25701600expressed protein
LOC_Os06g42740OsAffx.15899.1.S1_at11/116+25703044..25704021hypothetical protein
LOC_Os06g42754Os.53625.1.S1_at11/116+25707680..25709722expressed protein
LOC_Os06g42770Os.53688.1.S1_at11/116+25710871..25713681Type II intron maturase family protein, expressed
LOC_Os06g42780OsAffx.28069.1.S1_at11/116+25714154..25714941hypothetical protein
LOC_Os06g42790Os.20757.1.S1_a_at11/116+25717155..25721142Nudix hydrolase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28068.1.S1_at--649--5211Chr06:25700399..25700423 (25 bp)
GAATATTGATAAAGTTCCATTGGTC
LOC_Os06g42730
OsAffx.28068.1.S1_at--696--6692Chr09:20433576..20434017 (25 bp)
GTTCCATTGGTCAAATGTCCTGTTT
NONE
OsAffx.28068.1.S1_at--134--31Chr06:25700417..25700441 (25 bp)
ATTGGTCAAATGTCCTGTTTTAGTA
LOC_Os06g42730
OsAffx.28068.1.S1_at--596--7051Chr06:25700421..25700445 (25 bp)
GTCAAATGTCCTGTTTTAGTAATCC
LOC_Os06g42730
OsAffx.28068.1.S1_at--266--8711Chr06:25700427..25700448 (22 bp)
TGTCCTGTTTTAGTAATCCATGGTA
LOC_Os06g42730
OsAffx.28068.1.S1_at--1029--10231Chr06:25700435..25700810 (25 bp)
TTTAGTAATCCATGGTACAGCTGAT
LOC_Os06g42730
OsAffx.28068.1.S1_at--1046--8011Chr06:25700833..25700857 (25 bp)
GGAGGGCACTGTGGGAACTCTCTAA
LOC_Os06g42730
OsAffx.28068.1.S1_at--848--1071Chr06:25700835..25700859 (25 bp)
AGGGCACTGTGGGAACTCTCTAAAA
LOC_Os06g42730
OsAffx.28068.1.S1_at--410--8251Chr06:25700837..25700861 (25 bp)
GGCACTGTGGGAACTCTCTAAAATA
LOC_Os06g42730
OsAffx.28068.1.S1_at--896--10191Chr06:25700911..25700935 (25 bp)
TATATCCAGAATACATCAAGCACCT
LOC_Os06g42730
OsAffx.28068.1.S1_at--298--5171Chr06:25700919..25700943 (25 bp)
GAATACATCAAGCACCTAAAAAAGT
LOC_Os06g42730
Target Sequence 
GAATATTGATAAAGTTCCATTGGTCAAATGTCCTGTTTTAGTAATCCATGGTACAGCTGATGAAGTTGTCGACTGTTCTC
ATGGGAGGGCACTGTGGGAACTCTCTAAAATAAAGTATGAGCCTCTGTGGGTCAAAGGTGGAAATCATTGTAATCTGGAA
CTATATCCAGAATACATCAAGCACCTAAAAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis