Browse Element(s) Details


Os.46529.1.S1_a_at

Description gb:AK067870.1
DB_XREF= gi:32977888
TID=Os.46529.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126D19, full insert sequence.
FL= gb:AK067870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0455011/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04540OsAffx.28263.1.S1_at11/117+2004905..2005690hypothetical protein
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04560OsAffx.16082.1.S1_at11/117+2021458..2023361No apical meristem protein
LOC_Os07g04570OsAffx.5210.1.S1_at10/117+2031013..2032041RNA recognition motif family protein
LOC_Os07g04580Os.57389.1.S1_at10/117+2033472..2035042Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46529.1.S1_a_at--1138--4611Chr07:2010538..2010562 (25 bp)
GCGAGTAGACTCGATTCTGCGACAA
LOC_Os07g04550
Os.46529.1.S1_a_at--721--1431Chr07:2010573..2010597 (25 bp)
AGAACTCGTAGCTCTTGTGGACGCG
LOC_Os07g04550
Os.46529.1.S1_a_at--472--8111Chr07:2010591..2010615 (25 bp)
GGACGCGCTACAGTTGCAAATACGA
LOC_Os07g04550
Os.46529.1.S1_a_at--299--7311Chr07:2010787..2010811 (25 bp)
GTGCTCCACGTCTTCAAAGCATGTA
LOC_Os07g04550
Os.46529.1.S1_a_at--239--7411Chr07:2010849..2010873 (25 bp)
GTGATACAGATCCAATACCCATTAC
LOC_Os07g04550
Os.46529.1.S1_a_at--220--8211Chr07:2010936..2010960 (25 bp)
GGAATAATCCTCATTCTTCTGAAGT
LOC_Os07g04550
Os.46529.1.S1_a_at--395--5951Chr07:2011037..2011061 (25 bp)
GAGAATGCTTTCCACGGTTAACCTG
LOC_Os07g04550
Os.46529.1.S1_a_at--477--7891Chr07:2011052..2011076 (25 bp)
GGTTAACCTGGCTTGTTTCTATTCT
LOC_Os07g04550
Os.46529.1.S1_a_at--487--2611Chr07:2011078..2011102 (25 bp)
AACCCCGTTGGCTTGTATTCTATGT
LOC_Os07g04550
Os.46529.1.S1_a_at--68--5911Chr07:2011155..2011179 (25 bp)
GAGCTCATGGACTTTAGTTCCACAA
LOC_Os07g04550
Os.46529.1.S1_a_at--490--6691Chr07:2011171..2011195 (25 bp)
GTTCCACAACGTGTTCACTGTATCC
LOC_Os07g04550
Target Sequence 
GCGAGTAGACTCGATTCTGCGACAAAAGAAAAGGAAGAACTCGTAGCTCTTGTGGACGCGCTACAGTTGCAAATACGAAG
CCAAGACACTAGCACAAAACAAGTCTGCGAGGAGAGGTCGGAGCTGTGCTCCACGTCTTCAAAGCATGTAGACATGGAAG
ATGATAATGTGGATAAAGCTTGCTTAAGTGATACAGATCCAATACCCATTACTGAGAACATAGTTGATTTGGATGATGAT
GGAGTCGATATCCCTACAATTGGGGTCACGGAGTGGAATAATCCTCATTCTTCTGAAGTATCTGATGTAAGAGAAGTAAC
CACTGAACCTGAAGATAACAGCTTGGATATTCCTGTTGATAGCCAACCAGTATCTGAGAATGCTTTCCACGGTTAACCTG
GCTTGTTTCTATTCTTAACCCCGTTGGCTTGTATTCTATGTTCTCATTTTAGTTCATTGCAAACATTCATATATTCAAAT
TAAAGCTCGCTATGAGCTCATGGACTTTAGTTCCACAACGTGTTCACTGTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46529.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis