Browse Element(s) Details


Os.46533.1.S1_at

Description gb:AK067591.1
DB_XREF= gi:32977609
TID=Os.46533.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBa0046P18.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112H19, full insert sequence.
FL= gb:AK067591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3041011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30370Os.24932.3.S1_x_at10/1110+15451118..15458614splicing factor, CC1-like family protein, expressed
LOC_Os10g30380OsAffx.30609.1.S1_at11/1110+15460336..15463074Cytochrome P450 family protein
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed
LOC_Os10g30420Os.46788.1.S1_a_at10/1110+15483705..15488395Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os10g30430OsAffx.20304.1.S1_at11/1110+15491598..15492137heavy metal-associated domain containing protein
LOC_Os10g30440OsAffx.30610.1.S1_at11/1110+15494235..15494615hypothetical protein
LOC_Os10g30450OsAffx.6821.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_s_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30460Os.29992.2.S1_x_at3/1110+15501344..15502451hypothetical protein
LOC_Os10g30460OsAffx.7866.1.S1_x_at1/1110+15501344..15502451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46533.1.S1_at--1115--4311Chr10:15477716..15477740 (25 bp)
CCAGGTATAACTCTTGGTATGGCCA
LOC_Os10g30410
Os.46533.1.S1_at--1152--6891Chr10:15477700..15477724 (25 bp)
GTATGGCCAACGTAGAATTCCCCTT
LOC_Os10g30410
Os.46533.1.S1_at--487--8311Chr10:15477675..15477699 (25 bp)
GGCTAGTTTGCTTTACCATTTTGAT
LOC_Os10g30410
Os.46533.1.S1_at--906--3431Chr10:15477602..15477626 (25 bp)
GCACCTGGACTTGTTGGGCCTAAAC
LOC_Os10g30410
Os.46533.1.S1_at--1139--4431Chr10:15477585..15477609 (25 bp)
GCCTAAACGCACCAGCCTATATTTG
LOC_Os10g30410
Os.46533.1.S1_at--209--10191Chr10:15477568..15477592 (25 bp)
TATATTTGCACCCTGTTACTCGTGT
LOC_Os10g30410
Os.46533.1.S1_at--809--1031Chr10:15477526..15477550 (25 bp)
AGGTGGCAACACATACATATCTGAA
LOC_Os10g30410
Os.46533.1.S1_at--57--431Chr10:15477493..15477517 (25 bp)
ATCATAGTATGTTGCCTTTTCTCCC
LOC_Os10g30410
Os.46533.1.S1_at--728--8131Chr10:15477451..15477475 (25 bp)
GGACATATCCCCAATTATCGCAATA
LOC_Os10g30410
Os.46533.1.S1_at--542--9771Chr10:15477314..15477338 (25 bp)
TAAGGGCGCCTTTTGGACGCAATTT
LOC_Os10g30410
Os.46533.1.S1_at--577--5791Chr10:15477299..15477323 (25 bp)
GACGCAATTTCGCAATGTACACCAA
LOC_Os10g30410
Target Sequence 
CCAGGTATAACTCTTGGTATGGCCAACGTAGAATTCCCCTTGGCTAGTTTGCTTTACCATTTTGATTGGAAACTTCCTAA
TCAAATGGAGCCTGAGGAAATCGATATGAGAGAGGCACCTGGACTTGTTGGGCCTAAACGCACCAGCCTATATTTGCACC
CTGTTACTCGTGTTGCTCCAAGCAGTGTTTAGGTGGCAACACATACATATCTGAAGTAATGCTATCATAGTATGTTGCCT
TTTCTCCCTTCTATCGAAGTTGATGGGACATATCCCCAATTATCGCAATAAATTTGGATATCTAAATTGCTGTTTACATT
TCAAATTCGCTAAATTTGTATTGTGCGGAGGGTATATACCATGTCAAACCTCAAATTTGTACTCAGTGTATATGTATTTT
GATAAGGGCGCCTTTTGGACGCAATTTCGCAATGTACACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis