Browse Element(s) Details


Os.46536.1.S1_at

Description gb:AK066928.1
DB_XREF= gi:32976946
TID=Os.46536.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0044I14.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091H23, full insert sequence.
FL= gb:AK066928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g265408/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46536.1.S1_at--749--10451NONE
TTAGCTATTTCCAGTGCTGTATAAG
NONE
Os.46536.1.S1_at--99--211NONE
ATTTCCAGTGCTGTATAAGAGCCTG
NONE
Os.46536.1.S1_at--854--1371NONE
AGAGCCTGGAGAACTGTGACCCTGC
NONE
Os.46536.1.S1_at--526--9151Chr10:13504509..13504533 (25 bp)
TGCCCGTCGTGTTGGCGGCACGTAA
LOC_Os10g26540
Os.46536.1.S1_at--687--10871Chr10:13504520..13504544 (25 bp)
TTGGCGGCACGTAACTCCTGCGCAA
LOC_Os10g26540
Os.46536.1.S1_at--782--9171Chr10:13504559..13504583 (25 bp)
TCTTGGGTACTGTAAAGTTTGCGTA
LOC_Os10g26540
Os.46536.1.S1_at--46--10811Chr10:13504669..13504693 (25 bp)
TTGTTCATGCTGTTTTTCGCAGAAT
LOC_Os10g26540
Os.46536.1.S1_at--777--9091Chr10:13504676..13504700 (25 bp)
TGCTGTTTTTCGCAGAATTGTTCGC
LOC_Os10g26540
Os.46536.1.S1_at--71--4611Chr10:13504699..13504723 (25 bp)
GCGACTTCCGGTGCAGTATCATCGT
LOC_Os10g26540
Os.46536.1.S1_at--100--7771Chr10:13504708..13504732 (25 bp)
GGTGCAGTATCATCGTCCTTTGAAA
LOC_Os10g26540
Os.46536.1.S1_at--932--1471Chr10:13504790..13504814 (25 bp)
AGAATATAATTTTCACCTGGTGACC
LOC_Os10g26540
Target Sequence 
TTAGCTATTTCCAGTGCTGTATAAGAGCCTGGAGAACTGTGACCCTGCCCGTCGTGTTGGCGGCACGTAACTCCTGCGCA
AATAGCTCTTAGGTTTCTTGGGTACTGTAAAGTTTGCGTAAATGTGTAATCTCCACCTGCTCTGTAATCTGTTGCTCTTT
GCAGAGAAAAAAAAGGGGACCGATTGTGAACAATGAAAAAGCGTATTTGTTCATGCTGTTTTTCGCAGAATTGTTCGCGA
CTTCCGGTGCAGTATCATCGTCCTTTGAAAGGGATAGGATCCGAGGATGTATGAGTATAACTTATGATTGATTTGGTTCT
TGGTTGGAGAATATAATTTTCACCTGGTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis