Browse Element(s) Details


Os.46536.2.S1_at

Description gb:NM_196413.1
DB_XREF= gi:37534185
TID=Os.46536.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0044I14.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0044I14.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2654011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46536.2.S1_at--49--1131Chr10:13503174..13503198 (25 bp)
AGTGCAGCGACCTGCGGCATGACGA
LOC_Os10g26540
Os.46536.2.S1_at--151--4611Chr10:13503180..13503204 (25 bp)
GCGACCTGCGGCATGACGATCGGCA
LOC_Os10g26540
Os.46536.2.S1_at--900--4991Chr10:13503202..13503226 (25 bp)
GCATGGAAAGGGTGGCCGAATCAGG
LOC_Os10g26540
Os.46536.2.S1_at--956--5191Chr10:13503231..13503255 (25 bp)
GCAATTGCGGGTGGGTGCAGGCCAA
LOC_Os10g26540
Os.46536.2.S1_at--577--8631Chr10:13503242..13503266 (25 bp)
TGGGTGCAGGCCAATGCGTCCAGTT
LOC_Os10g26540
Os.46536.2.S1_at--908--7751Chr10:13503244..13503268 (25 bp)
GGTGCAGGCCAATGCGTCCAGTTAT
LOC_Os10g26540
Os.46536.2.S1_at--408--7331Chr10:13503245..13503269 (25 bp)
GTGCAGGCCAATGCGTCCAGTTATG
LOC_Os10g26540
Os.46536.2.S1_at--1157--4991Chr10:13503247..13503271 (25 bp)
GCAGGCCAATGCGTCCAGTTATGCG
LOC_Os10g26540
Os.46536.2.S1_at--437--8451Chr10:13503250..13503274 (25 bp)
GGCCAATGCGTCCAGTTATGCGCAT
LOC_Os10g26540
Os.46536.2.S1_at--121--3031Chr10:13503254..13503278 (25 bp)
AATGCGTCCAGTTATGCGCATGCGG
LOC_Os10g26540
Os.46536.2.S1_at--922--9131Chr10:13503256..13503280 (25 bp)
TGCGTCCAGTTATGCGCATGCGGTG
LOC_Os10g26540
Target Sequence 
AGTGCAGCGACCTGCGGCATGACGATCGGCATGGAAAGGGTGGCCGAATCAGGGGAGGCAATTGCGGGTGGGTGCAGGCC
AATGCGTCCAGTTATGCGCATGCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46536.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis