Browse Element(s) Details


Os.46566.2.A1_at

Description gb:NM_195714.1
DB_XREF= gi:37532787
TID=Os.46566.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093I09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093I09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g439201/11Anaphase promoting complex subunit 8/cdc23 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed
LOC_Os02g43940Os.50637.1.S1_at11/112+26518717..26519783AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005680cellular_componentanaphase-promoting complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46566.2.A1_at--839--10731Chr10:8747714..8747738 (25 bp)
TTGCACACGACGAGCCTGACGGCCG
NONE
Os.46566.2.A1_at--671--6171Chr10:8747658..8747682 (25 bp)
GAGGAGGCCCTTGCGCGACGCGATG
NONE
Os.46566.2.A1_at--91--6071Chr10:8747627..8747651 (25 bp)
GAGTTGCTCAAGAGGCCGCTGTCGA
NONE
Os.46566.2.A1_at--11--9731Chr10:8747620..8747644 (25 bp)
TCAAGAGGCCGCTGTCGAACACCTT
NONE
Os.46566.2.A1_at--865--9151Chr10:8747498..8747522 (25 bp)
TGCCGCCTCTGCTGTACGAAGCCGA
NONE
Os.46566.2.A1_at--275--10652Chr10:8732736..8732755 (20 bp)
TTCCGGCGGCAGATGTACTCCGCGT
NONE
Os.46566.2.A1_at--372--1291Chr10:8747363..8747387 (25 bp)
AGATCGTCTGTCTCCAGCGAACATT
NONE
Os.46566.2.A1_at--427--4111Chr10:8747346..8747370 (25 bp)
CGAACATTCCGCGAACACGAGGAGG
NONE
Os.46566.2.A1_at--144--9352Chr02:26506919..26506947 (23 bp)
TCGCTTGAGGCGCTTTTGATTGCTC
LOC_Os02g43920
Os.46566.2.A1_at--625--4211Chr10:8747215..8747239 (25 bp)
CCGACACCGTCGAGACGGACAGGGA
NONE
Os.46566.2.A1_at--38--2131Chr10:8747197..8747221 (25 bp)
ACAGGGAGAGCCACCCGTCGTCGCA
NONE
Target Sequence 
TTGCACACGACGAGCCTGACGGCCGCGGCGCGCGAGGAGCGGCGGAGCTCGAGGACGAGGAGGCCCTTGCGCGACGCGAT
GAGGCGGGAGTTGCTCAAGAGGCCGCTGTCGAACACCTTGTCGAGCTCGCCTCCGCCGGCGAACCTGGAGGAGTAGGAGG
GCAACGGGATGAACCGTGGTGGCGGTGGCGCGCCCGAAGAAGACGACGAGTTCTCCTGCCGCCTCTGCTGTACGAAGCCG
ACGGCGAGGGCGCCGACGTAGCGGCGGGAGGGCGGCTTCCGGCGGCAGATGTACTCCGCGTCGCCGGCGACGAGGCGGCG
CCACCGCCTGCAGGTGGCGGCGCACCGGACGAGATCGTCTGTCTCCAGCGAACATTCCGCGAACACGAGGAGGAGGACCT
CGTCGTGGAGGGGGCACCCATCATCCTCGACCGCTCCGCCGCCGACCCCTCCACCACCTCCTCCGCCTCCTCGCTTGAGG
CGCTTTTGATTGCTCTCTCCCGACACCGTCGAGACGGACAGGGAGAGCCACCCGTCGTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46566.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis