Browse Element(s) Details


Os.46566.2.S1_x_at

Description gb:NM_195714.1
DB_XREF= gi:37532787
TID=Os.46566.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093I09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093I09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1794011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17910OsAffx.18277.1.S1_at11/1110+8724773..8726138Protein kinase domain containing protein
LOC_Os10g17920OsAffx.20540.1.S1_at11/1110+8728705..8730287retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17930Os.46855.1.S1_at11/1110+8731422..8733068F-box domain containing protein, expressed
LOC_Os10g17940Os.46566.2.S1_x_at11/1110+8747152..8748591F-box domain containing protein
LOC_Os10g17950OsAffx.18278.1.S1_at11/1110+8756999..8763086Protein kinase domain containing protein
LOC_Os10g17960OsAffx.8290.1.S1_at11/1110+8770430..8773635receptor-like protein kinase homolog RK20-1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46566.2.S1_x_at--901--8311Chr10:8748031..8748055 (25 bp)
GGCTCCGTGTTCTGGCTGCTAAAGA
LOC_Os10g17940
Os.46566.2.S1_x_at--364--9811Chr10:8748050..8748074 (25 bp)
TAAAGAACCTGCTGTTCGTCGTCCG
LOC_Os10g17940
Os.46566.2.S1_x_at--1136--5971Chr10:8748100..8748124 (25 bp)
GAGACCTTCCCATCAAAATGGTGCA
LOC_Os10g17940
Os.46566.2.S1_x_at--1161--2291Chr10:8748115..8748139 (25 bp)
AAATGGTGCAGCAAGCTCTGCTTCT
LOC_Os10g17940
Os.46566.2.S1_x_at--1071--1031Chr10:8748206..8748230 (25 bp)
AGGTGGACCGACACGTGACGAGCAA
LOC_Os10g17940
Os.46566.2.S1_x_at--573--2471Chr10:8748232..8748256 (25 bp)
AACACCGTGAGGATCAACGTCATCT
LOC_Os10g17940
Os.46566.2.S1_x_at--92--4171Chr10:8748278..8748302 (25 bp)
CGCCGACATGGGAGTGCGACAATGC
LOC_Os10g17940
Os.46566.2.S1_x_at--612--2231Chr10:8748296..8748320 (25 bp)
ACAATGCGCGCGACGTGGAGCTCAA
LOC_Os10g17940
Os.46566.2.S1_x_at--46--8251Chr10:8748403..8748427 (25 bp)
GGCACCGACTTGTACAACCAGCAGC
LOC_Os10g17940
Os.46566.2.S1_x_at--1062--7211Chr10:8748513..8748537 (25 bp)
GTCGAGCTTCTTCGGCTACGAGATG
LOC_Os10g17940
Os.46566.2.S1_x_at--96--3731Chr10:8748528..8748552 (25 bp)
CTACGAGATGGACCGTGTGGCCTAC
LOC_Os10g17940
Target Sequence 
GGCTCCGTGTTCTGGCTGCTAAAGAACCTGCTGTTCGTCGTCCGCCTCGGCGCGCTGAAGGCTACCACCGAGACCTTCCC
ATCAAAATGGTGCAGCAAGCTCTGCTTCTGCTACGGCAGCCCGGTGCAGAACCGCCAGCTCGCCGTCACGCCGGACGGCC
GGCTCTGCGCCGTGCAGGTGGACCGACACGTGACGAGCAACAACACCGTGAGGATCAACGTCATCTCCCGCCACGACGGC
TACGGCCCGCCGACATGGGAGTGCGACAATGCGCGCGACGTGGAGCTCAACCGCGTGCTGCCCATGGCGAACGTGAGGAG
GGTTTGCCTGAGGGGCGTGTGCGAGAGGAGCGGGGTCGTCTTCCTCGCCATCGGCACCGACTTGTACAACCAGCAGCCGG
ACCTGGCGCTCTACGCGCTGGACATGGACAAGAAGGAGGCACGGAAGGTGGCGGCGCCGCCGGGCCACTGCCGCCGGTTG
TCGTCGAGCTTCTTCGGCTACGAGATGGACCGTGTGGCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46566.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis