Browse Element(s) Details


OsAffx.8290.1.S1_at

Description tigr:9638.m01490
TID=OsAffx.8290.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1796011/11receptor-like protein kinase homolog RK20-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17940Os.46566.2.S1_x_at11/1110+8747152..8748591F-box domain containing protein
LOC_Os10g17950OsAffx.18278.1.S1_at11/1110+8756999..8763086Protein kinase domain containing protein
LOC_Os10g17960OsAffx.8290.1.S1_at11/1110+8770430..8773635receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os10g17970Os.26886.1.S1_x_at8/1110+8775033..8778307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17970Os.26886.3.S1_x_at3/1110+8775033..8778307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17970OsAffx.16244.1.S1_x_at1/1110+8775033..8778307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980Os.26886.6.S1_s_at11/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980Os.26886.2.S1_s_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980OsAffx.16467.1.S1_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17990Os.23342.1.S1_at11/1110+8789197..8795159Phosphatidate cytidylyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8290.1.S1_at--588--2151Chr10:8771212..8771234 (23 bp)
ACAAACCATGTCGTTGGGACGCTAG
LOC_Os10g17960
OsAffx.8290.1.S1_at--40--9491Chr10:8770736..8770857 (25 bp)
TCTGCTTAGCTATGTGTGGGACCAC
LOC_Os10g17960
OsAffx.8290.1.S1_at--1003--7631Chr10:8770702..8770726 (25 bp)
GGGACGCCACTAGAAATTGCTGATG
LOC_Os10g17960
OsAffx.8290.1.S1_at--607--71Chr10:8770687..8770711 (25 bp)
ATTGCTGATGCATCACTGCTTGGTG
LOC_Os10g17960
OsAffx.8290.1.S1_at--780--871Chr10:8770662..8770686 (25 bp)
ATGGCCGCAGCCTATCAGATATGGA
LOC_Os10g17960
OsAffx.8290.1.S1_at--463--9251Chr10:8770611..8770635 (25 bp)
TCCTTTGTGTCCAAGAGAACCCAGT
LOC_Os10g17960
OsAffx.8290.1.S1_at--538--7971Chr10:8770586..8770610 (25 bp)
GGATCGGCCAACAATGCTCGACATT
LOC_Os10g17960
OsAffx.8290.1.S1_at--897--9351Chr10:8770569..8770593 (25 bp)
TCGACATTCTCGTCATGCTTCATGA
LOC_Os10g17960
OsAffx.8290.1.S1_at--1096--5631Chr10:8770540..8770564 (25 bp)
GACACCAATAGCTTTGTTGCACCAT
LOC_Os10g17960
OsAffx.8290.1.S1_at--1155--371Chr10:8770517..8770541 (25 bp)
ATCAAAACCTGCGTTCACCTTTGCG
LOC_Os10g17960
OsAffx.8290.1.S1_at--381--2831Chr10:8770475..8770499 (25 bp)
AAGTTCTAGCCAAGGTGTTGCCGCA
LOC_Os10g17960
Target Sequence 
ACAAACCATGTCGTTGGGACGCTAGGATATATGGCGCCAGAGTATGCAGTTCTTGGACATGTATCTGTTAAGTTAGATGT
CTATAGCTTCGGAATTTTAGTCCTGGAGATTGTGACAGGAAGAAGGAACACTGATGTGTCAGGTGAAGTGGAAGAATCTA
ACAATCTGCTTAGCTATGTGTGGGACCACTGGGTGAAGGGGACGCCACTAGAAATTGCTGATGCATCACTGCTTGGTGAT
GGCCGCAGCCTATCAGATATGGAGCTGCTCAAATGTGTCCACTTCGGGCTCCTTTGTGTCCAAGAGAACCCAGTGGATCG
GCCAACAATGCTCGACATTCTCGTCATGCTTCATGATGTTGACACCAATAGCTTTGTTGCACCATCAAAACCTGCGTTCA
CCTTTGCGCATGGTGGGAACACGACAAGTTCTAGCCAAGGTGTTGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis