Browse Element(s) Details


OsAffx.18278.1.S1_at

Description tigr:9638.m01489
TID=OsAffx.18278.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1795011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17930Os.46855.1.S1_at11/1110+8731422..8733068F-box domain containing protein, expressed
LOC_Os10g17940Os.46566.2.S1_x_at11/1110+8747152..8748591F-box domain containing protein
LOC_Os10g17950OsAffx.18278.1.S1_at11/1110+8756999..8763086Protein kinase domain containing protein
LOC_Os10g17960OsAffx.8290.1.S1_at11/1110+8770430..8773635receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os10g17970Os.26886.1.S1_x_at8/1110+8775033..8778307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17970Os.26886.3.S1_x_at3/1110+8775033..8778307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17970OsAffx.16244.1.S1_x_at1/1110+8775033..8778307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980Os.26886.6.S1_s_at11/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980Os.26886.2.S1_s_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980OsAffx.16467.1.S1_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18278.1.S1_at--49--10851Chr10:8758094..8758118 (25 bp)
TTGGCGAGGCTCTGTAGTGGAACAA
LOC_Os10g17950
OsAffx.18278.1.S1_at--486--6891Chr10:8758060..8758084 (25 bp)
GTATCACAAGCCAAGTCGTCGGGAC
LOC_Os10g17950
OsAffx.18278.1.S1_at--969--9391Chr10:8757565..8758069 (25 bp)
TCGTCGGGACACTGGGTTATATGGC
LOC_Os10g17950
OsAffx.18278.1.S1_at--220--1131Chr10:8757528..8757552 (25 bp)
AGTGCTTGGGCACCTGTCAGTCAAG
LOC_Os10g17950
OsAffx.18278.1.S1_at--37--2711Chr10:8757405..8757429 (25 bp)
AAGCTATGTGCGTCCTATTGATCAA
LOC_Os10g17950
OsAffx.18278.1.S1_at--500--8051Chr10:8757263..8757287 (25 bp)
GGAGATCACTGACACGTTGCTGCTG
LOC_Os10g17950
OsAffx.18278.1.S1_at--109--5051Chr10:8757157..8757181 (25 bp)
GCAGACCGGCCGACAATGCTGAGTG
LOC_Os10g17950
OsAffx.18278.1.S1_at--101--3031Chr10:8757143..8757167 (25 bp)
AATGCTGAGTGTCCTTGTCATGCTT
LOC_Os10g17950
OsAffx.18278.1.S1_at--852--6271Chr10:8757115..8757139 (25 bp)
GATGTTGACACCACCAATTTTGCTG
LOC_Os10g17950
OsAffx.18278.1.S1_at--894--3111Chr10:8757100..8757124 (25 bp)
AATTTTGCTGCACCATCGAAACCGG
LOC_Os10g17950
OsAffx.18278.1.S1_at--125--5551Chr10:8757083..8757107 (25 bp)
GAAACCGGCATTTACTTTTGCGAAT
LOC_Os10g17950
Target Sequence 
TTGGCGAGGCTCTGTAGTGGAACAAAAACTACAAGTATCACAAGCCAAGTCGTCGGGACACTGGGTTATATGGCACCAGA
GTATGCAGTGCTTGGGCACCTGTCAGTCAAGGTTGATGTCTACAGCTTTGGTATCTTAGTATTGGAGATTGTGACCGGAA
GGAGGAATACCGATGTGTTCGACGCAGACGAAGAATCTAGCAATCTACTAAGCTATGTGCGTCCTATTGATCAATTGTTC
TATGATTTCCTTAAAGCAATGGCATTTTTCATGTTGAAAGTATGGGATCATTGGCAGAAAGGGATACCACTGGAGATCAC
TGACACGTTGCTGCTGCTCAGCGGTAGCCGGGGTTTGCAGGACATGGAGCTGCTCAAGTGTGTCCACATCGGGCTCCTCT
GTGTCCAGGAGAACCCGGCAGACCGGCCGACAATGCTGAGTGTCCTTGTCATGCTTCAGGATGTTGACACCACCAATTTT
GCTGCACCATCGAAACCGGCATTTACTTTTGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis